Variant report

Variant	rs72908809
Chromosome Location	chr6:80843144-80843145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:80843054..80844740-chr6:81198148..81200503,2	MCF-7	breast:
2	chr6:80816378..80817947-chr6:80842204..80843993,2	K562	blood:
3	chr6:80842428..80843336-chr6:81048460..81049369,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1179571	1.00[ASN][1000 genomes]
rs12525046	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526876	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527244	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527712	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528770	1.00[EUR][1000 genomes]
rs12529191	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12530290	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891532	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891545	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706829	1.00[ASN][1000 genomes]
rs4706830	1.00[ASN][1000 genomes]
rs55755254	1.00[ASN][1000 genomes]
rs57913486	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57985210	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584372	1.00[ASN][1000 genomes]
rs585506	1.00[ASN][1000 genomes]
rs587999	1.00[ASN][1000 genomes]
rs588009	1.00[ASN][1000 genomes]
rs590686	1.00[ASN][1000 genomes]
rs59552964	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs598234	1.00[ASN][1000 genomes]
rs59973779	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs610946	1.00[ASN][1000 genomes]
rs612208	1.00[ASN][1000 genomes]
rs613577	1.00[ASN][1000 genomes]
rs623085	1.00[ASN][1000 genomes]
rs631367	1.00[ASN][1000 genomes]
rs634499	1.00[ASN][1000 genomes]
rs636499	1.00[ASN][1000 genomes]
rs638921	1.00[ASN][1000 genomes]
rs640568	1.00[ASN][1000 genomes]
rs641229	1.00[ASN][1000 genomes]
rs642943	1.00[ASN][1000 genomes]
rs644666	1.00[ASN][1000 genomes]
rs6454149	1.00[ASN][1000 genomes]
rs646369	1.00[ASN][1000 genomes]
rs649148	1.00[ASN][1000 genomes]
rs651065	1.00[ASN][1000 genomes]
rs66518170	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66560352	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66606872	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs669420	1.00[ASN][1000 genomes]
rs670119	1.00[ASN][1000 genomes]
rs670390	1.00[ASN][1000 genomes]
rs67379633	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67456645	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67597629	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632695	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677134	1.00[ASN][1000 genomes]
rs67851250	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67988458	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688442	1.00[ASN][1000 genomes]
rs6906403	1.00[ASN][1000 genomes]
rs6908084	1.00[ASN][1000 genomes]
rs6924011	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723308	1.00[ASN][1000 genomes]
rs72892417	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892426	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892441	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892456	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892458	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906861	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72906886	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906894	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908830	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72908854	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479994	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764442	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755034	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757610	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771047	0.80[EUR][1000 genomes]
rs7771726	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772483	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806781	1.00[ASN][1000 genomes]
rs806839	1.00[ASN][1000 genomes]
rs806850	0.83[ASN][1000 genomes]
rs811567	1.00[ASN][1000 genomes]
rs932463	1.00[ASN][1000 genomes]
rs9443739	1.00[ASN][1000 genomes]
rs9688524	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9688535	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80817000-80852800	Weak transcription	Psoas Muscle	Psoas
2	chr6:80818000-80861400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:80818000-80866000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:80829400-80844600	Weak transcription	Fetal Thymus	thymus
5	chr6:80829400-80852000	Weak transcription	Fetal Stomach	stomach
6	chr6:80832400-80844600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:80834400-80844200	Strong transcription	Primary T cells from cord blood	blood
8	chr6:80836200-80852800	Weak transcription	Right Ventricle	heart
9	chr6:80836400-80855800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:80836400-80863000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:80836400-80891200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:80836600-80846800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:80836600-80852800	Weak transcription	Pancreas	Pancrea
14	chr6:80836800-80843400	Weak transcription	HepG2	liver
15	chr6:80836800-80843600	Weak transcription	Small Intestine	intestine
16	chr6:80836800-80846000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:80837000-80852600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:80837000-80853000	Weak transcription	Fetal Kidney	kidney
19	chr6:80837000-80895200	Weak transcription	Fetal Intestine Small	intestine
20	chr6:80837200-80843200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:80837400-80854200	Weak transcription	Brain Substantia Nigra	brain
22	chr6:80837600-80853000	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:80838000-80843400	Strong transcription	Dnd41	blood
24	chr6:80838000-80846800	Strong transcription	Liver	Liver
25	chr6:80838400-80844000	Weak transcription	Hela-S3	cervix
26	chr6:80838400-80852800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:80838400-80853400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:80838600-80852800	Weak transcription	Aorta	Aorta
29	chr6:80838600-80857400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:80838600-80873200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:80838800-80843800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:80838800-80843800	Weak transcription	NHEK	skin
33	chr6:80838800-80843800	Weak transcription	Osteobl	bone
34	chr6:80838800-80845400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:80838800-80846400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:80838800-80852000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:80838800-80852000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:80838800-80852000	Weak transcription	NHDF-Ad	bronchial
39	chr6:80838800-80852200	Weak transcription	NH-A	brain
40	chr6:80838800-80852400	Weak transcription	HSMMtube	muscle
41	chr6:80838800-80852600	Weak transcription	NHLF	lung
42	chr6:80838800-80853200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:80839200-80873200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:80839200-80889600	Weak transcription	Lung	lung
45	chr6:80839400-80845200	Weak transcription	Placenta	Placenta
46	chr6:80839400-80845400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:80839600-80852800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr6:80839600-80857600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr6:80839600-80859600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:80840000-80845600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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