The 2.0 version of rSNPBase

Variant report

Variant rs57913486
Chromosome Location chr6:80858917-80858918
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:80818000-80861400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr6:80818000-80866000 Weak transcription Primary T helper cells PMA-I stimulated --
3 chr6:80836400-80863000 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr6:80836400-80891200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr6:80837000-80895200 Weak transcription Fetal Intestine Small intestine
6 chr6:80838600-80873200 Weak transcription HUES6 Cell Line embryonic stem cell
7 chr6:80839200-80873200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr6:80839200-80889600 Weak transcription Lung lung
9 chr6:80839600-80859600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr6:80840000-80860800 Weak transcription Fetal Intestine Large intestine
11 chr6:80841000-80859200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr6:80841000-80860800 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr6:80841200-80861400 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr6:80841200-80895800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr6:80841400-80873400 Weak transcription Primary B cells from peripheral blood blood
16 chr6:80842200-80914200 Weak transcription Primary B cells from cord blood blood
17 chr6:80844200-80861400 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr6:80844200-80873200 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr6:80846400-80861400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr6:80847800-80860200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr6:80851400-80859600 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr6:80853000-80860600 Weak transcription Brain Cingulate Gyrus brain
23 chr6:80853400-80877200 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr6:80853600-80862400 Weak transcription Psoas Muscle Psoas
25 chr6:80853600-80862600 Weak transcription Pancreas Pancrea
26 chr6:80853600-80873400 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr6:80853800-80859000 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr6:80853800-80891800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr6:80854000-80859600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr6:80854400-80860400 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr6:80854800-80860200 Weak transcription Primary T cells fromperipheralblood blood
32 chr6:80855200-80880200 Weak transcription Brain Angular Gyrus brain
33 chr6:80855200-80907000 Weak transcription Brain Hippocampus Middle brain
34 chr6:80855200-80907200 Weak transcription Ovary ovary
35 chr6:80855400-80886200 Weak transcription Fetal Muscle Leg muscle
36 chr6:80855400-80895400 Weak transcription Fetal Stomach stomach
37 chr6:80855600-80860800 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr6:80855600-80861600 Weak transcription Right Ventricle heart
39 chr6:80855600-80872800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr6:80855800-80861600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr6:80855800-80863200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr6:80855800-80896000 Weak transcription Aorta Aorta
43 chr6:80856000-80859000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr6:80856000-80861400 Weak transcription Fetal Heart heart
45 chr6:80856000-80863000 Weak transcription Left Ventricle heart
46 chr6:80856000-80873000 Weak transcription Muscle Satellite Cultured Cells --
47 chr6:80856600-80873200 Weak transcription Primary T helper cells fromperipheralblood blood
48 chr6:80856800-80878400 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr6:80858000-80870600 Weak transcription HSMM muscle
50 chr6:80858200-80873200 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015