Variant report

Variant	rs6920430
Chromosome Location	chr6:81037403-81037404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1040593	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1179571	0.83[ASN][1000 genomes]
rs12525046	0.83[ASN][1000 genomes]
rs12526876	0.83[ASN][1000 genomes]
rs12527244	0.83[ASN][1000 genomes]
rs12527712	0.83[ASN][1000 genomes]
rs12530290	0.83[ASN][1000 genomes]
rs16891532	0.83[ASN][1000 genomes]
rs16891545	0.83[ASN][1000 genomes]
rs4706116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4706829	0.83[ASN][1000 genomes]
rs4706830	0.83[ASN][1000 genomes]
rs55755254	0.83[ASN][1000 genomes]
rs57913486	0.83[ASN][1000 genomes]
rs584372	0.83[ASN][1000 genomes]
rs585506	0.83[ASN][1000 genomes]
rs587999	0.83[ASN][1000 genomes]
rs588009	0.83[ASN][1000 genomes]
rs590686	0.83[ASN][1000 genomes]
rs598234	0.83[ASN][1000 genomes]
rs59973779	0.83[ASN][1000 genomes]
rs610946	0.83[ASN][1000 genomes]
rs612208	0.83[ASN][1000 genomes]
rs613577	0.83[ASN][1000 genomes]
rs623085	0.83[ASN][1000 genomes]
rs631367	0.83[ASN][1000 genomes]
rs634499	0.83[ASN][1000 genomes]
rs636499	0.83[ASN][1000 genomes]
rs638921	0.83[ASN][1000 genomes]
rs640568	0.83[ASN][1000 genomes]
rs641229	0.83[ASN][1000 genomes]
rs642943	0.83[ASN][1000 genomes]
rs644666	0.83[ASN][1000 genomes]
rs6454149	0.83[ASN][1000 genomes]
rs646369	0.83[ASN][1000 genomes]
rs649148	0.83[ASN][1000 genomes]
rs651065	0.83[ASN][1000 genomes]
rs66518170	0.83[ASN][1000 genomes]
rs66560352	0.83[ASN][1000 genomes]
rs669420	0.83[ASN][1000 genomes]
rs670119	0.83[ASN][1000 genomes]
rs670390	0.83[ASN][1000 genomes]
rs67379633	0.83[ASN][1000 genomes]
rs67456645	0.83[ASN][1000 genomes]
rs67597629	0.83[ASN][1000 genomes]
rs67632695	0.83[ASN][1000 genomes]
rs677134	0.83[ASN][1000 genomes]
rs67851250	0.83[ASN][1000 genomes]
rs67988458	0.83[ASN][1000 genomes]
rs688442	0.83[ASN][1000 genomes]
rs6906403	0.83[ASN][1000 genomes]
rs6908084	0.83[ASN][1000 genomes]
rs6924011	0.83[ASN][1000 genomes]
rs723308	0.83[ASN][1000 genomes]
rs72892417	0.83[ASN][1000 genomes]
rs72892426	0.83[ASN][1000 genomes]
rs72892441	0.83[ASN][1000 genomes]
rs72892456	0.83[ASN][1000 genomes]
rs72892458	0.83[ASN][1000 genomes]
rs72908854	0.83[ASN][1000 genomes]
rs73479994	0.83[ASN][1000 genomes]
rs764442	0.83[ASN][1000 genomes]
rs7757610	0.83[ASN][1000 genomes]
rs7771726	0.83[ASN][1000 genomes]
rs7772483	0.83[ASN][1000 genomes]
rs806781	0.83[ASN][1000 genomes]
rs806839	0.83[ASN][1000 genomes]
rs806844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806846	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806850	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811567	0.83[ASN][1000 genomes]
rs932463	0.83[ASN][1000 genomes]
rs9443739	0.83[ASN][1000 genomes]
rs9688524	0.83[ASN][1000 genomes]
rs9688535	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1796319	chr6:81034505-81058025	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81027000-81044600	Weak transcription	Aorta	Aorta
3	chr6:81029400-81038200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:81029400-81038600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:81029400-81079600	Weak transcription	HSMM	muscle
6	chr6:81032000-81037600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:81033800-81070200	Weak transcription	Left Ventricle	heart
8	chr6:81034000-81039200	Weak transcription	Esophagus	oesophagus
9	chr6:81035200-81039200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:81035600-81037600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:81036600-81041000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:81036800-81044600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:81037000-81038400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:81037200-81041000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:81037200-81041200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:81037200-81041200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:81037400-81037800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:81037400-81038200	Enhancers	Fetal Lung	lung
19	chr6:81037400-81038600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:81037400-81039600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr6:81037400-81044800	Enhancers	Cortex derived primary cultured neurospheres	brain

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