Variant report

Variant	rs742834
Chromosome Location	chr6:80920735-80920736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11961345	0.86[CHB][hapmap]
rs11961389	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs11961412	0.86[CHB][hapmap]
rs11961506	0.86[ASN][1000 genomes]
rs11961937	0.85[ASN][1000 genomes]
rs11962441	0.92[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11967081	0.86[CHB][hapmap]
rs12110563	0.93[ASN][1000 genomes]
rs1324119	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474790	0.80[JPT][hapmap]
rs16891532	0.81[CEU][hapmap]
rs16891545	0.81[CEU][hapmap]
rs2322747	0.81[GIH][hapmap]
rs3749896	0.92[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3805893	0.92[CHB][hapmap]
rs3805914	0.92[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3805915	0.92[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3805916	0.84[CHB][hapmap]
rs3805918	0.92[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3805923	0.84[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3812123	0.86[CHB][hapmap]
rs3812124	0.86[CHB][hapmap]
rs3812148	0.84[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs3828750	0.86[CHB][hapmap]
rs4235811	0.81[GIH][hapmap]
rs59155686	0.85[ASN][1000 genomes]
rs59460144	0.93[ASN][1000 genomes]
rs59516180	0.90[ASN][1000 genomes]
rs651314	0.81[GIH][hapmap]
rs662408	0.81[GIH][hapmap]
rs66486409	0.89[ASN][1000 genomes]
rs700490	0.81[GIH][hapmap]
rs723307	0.81[GIH][hapmap]
rs73477975	0.85[ASN][1000 genomes]
rs73477981	0.85[ASN][1000 genomes]
rs73477985	0.85[ASN][1000 genomes]
rs73479907	0.85[ASN][1000 genomes]
rs73479909	0.85[ASN][1000 genomes]
rs73479918	0.85[ASN][1000 genomes]
rs73479932	0.88[ASN][1000 genomes]
rs73479950	0.93[ASN][1000 genomes]
rs73479953	0.93[ASN][1000 genomes]
rs73479968	0.93[ASN][1000 genomes]
rs73479980	0.93[ASN][1000 genomes]
rs73482011	0.93[ASN][1000 genomes]
rs73482029	0.90[ASN][1000 genomes]
rs7747016	0.80[JPT][hapmap]
rs7771047	0.81[CEU][hapmap]
rs806840	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs806843	0.81[GIH][hapmap]
rs806845	0.80[JPT][hapmap]
rs806847	0.80[JPT][hapmap]
rs806848	0.80[JPT][hapmap]
rs809876	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80878000-80921000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:80882400-80935400	Weak transcription	Dnd41	blood
3	chr6:80891600-80931200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:80896200-80921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:80896400-80927400	Weak transcription	Aorta	Aorta
6	chr6:80896400-80943800	Weak transcription	Right Ventricle	heart
7	chr6:80904200-80921800	Weak transcription	Fetal Thymus	thymus
8	chr6:80905600-80923800	Weak transcription	Small Intestine	intestine
9	chr6:80907800-80920800	Weak transcription	Pancreas	Pancrea
10	chr6:80907800-80921000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:80908000-80936200	Weak transcription	Fetal Lung	lung
12	chr6:80909000-80940200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:80910000-80933400	Weak transcription	Esophagus	oesophagus
14	chr6:80911200-80924200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:80911800-80935200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:80912000-80921000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:80913400-80923200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:80914600-80980400	Weak transcription	Ovary	ovary
19	chr6:80914800-80921000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:80914800-80929000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:80914800-80934400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:80914800-80938400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:80914800-80938600	Weak transcription	Liver	Liver
24	chr6:80915200-80921000	Weak transcription	Primary B cells from cord blood	blood
25	chr6:80915400-80938200	Weak transcription	Primary T cells from cord blood	blood
26	chr6:80915400-80942000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:80915800-80956000	Weak transcription	Brain Substantia Nigra	brain
28	chr6:80916800-80930000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:80919400-80921400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr6:80919400-80921400	Enhancers	GM12878-XiMat	blood
31	chr6:80919400-80921800	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:80919400-80923000	Enhancers	Fetal Heart	heart
33	chr6:80919600-80920800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:80919800-80920800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:80919800-80921000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:80919800-80921200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr6:80919800-80921400	Enhancers	Rectal Smooth Muscle	rectum
38	chr6:80919800-80921600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:80919800-80921800	Enhancers	Colon Smooth Muscle	Colon
40	chr6:80920000-80921000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:80920000-80921200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr6:80920000-80921400	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr6:80920000-80921600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:80920200-80921200	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr6:80920400-80920800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:80920400-80920800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:80920400-80920800	Enhancers	Psoas Muscle	Psoas
48	chr6:80920400-80921200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:80920400-80921200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:80920400-80921200	Enhancers	Fetal Stomach	stomach

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