Variant report

Variant	rs11961412
Chromosome Location	chr6:81051896-81051897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11961345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11961389	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[ASN][1000 genomes]
rs11962441	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs11963923	0.89[AFR][1000 genomes]
rs11967081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[ASN][1000 genomes]
rs11968568	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1324119	0.93[CHB][hapmap]
rs16891629	0.83[YRI][hapmap]
rs28827323	0.82[ASN][1000 genomes]
rs28839510	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28888768	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35629704	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3749896	0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap]
rs3793004	0.84[JPT][hapmap]
rs3805862	1.00[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3805893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3805896	0.83[YRI][hapmap]
rs3805914	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs3805915	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs3805918	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs3805923	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs3812123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[ASN][1000 genomes]
rs3812124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3828750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[ASN][1000 genomes]
rs60566469	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6906392	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73463518	0.91[ASN][1000 genomes]
rs73463519	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73463522	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73463531	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73463536	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73463560	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73465567	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73465590	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73467507	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73467544	0.95[AFR][1000 genomes]
rs742834	0.86[CHB][hapmap]
rs806840	1.00[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1796319	chr6:81034505-81058025	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv16646	chr6:81040322-81055387	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv463907	chr6:81047559-81075912	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv604053	chr6:81047559-81075912	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv970303	chr6:81050335-81062570	Enhancers Weak transcription	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81029400-81079600	Weak transcription	HSMM	muscle
3	chr6:81033800-81070200	Weak transcription	Left Ventricle	heart
4	chr6:81042200-81056400	Weak transcription	Fetal Heart	heart
5	chr6:81045800-81052600	Weak transcription	Osteobl	bone
6	chr6:81048200-81058000	Weak transcription	Psoas Muscle	Psoas
7	chr6:81048200-81066800	Weak transcription	Pancreas	Pancrea
8	chr6:81048400-81064200	Weak transcription	Liver	Liver
9	chr6:81049200-81052000	Enhancers	Fetal Stomach	stomach
10	chr6:81050400-81071200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:81051200-81052000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:81051200-81052600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:81051600-81053400	Weak transcription	NH-A	brain
14	chr6:81051600-81059200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:81051800-81056000	Weak transcription	Fetal Kidney	kidney
16	chr6:81051800-81056800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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