Variant report

Variant	rs73465567
Chromosome Location	chr6:81040692-81040693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81029449..81030983-chr6:81039020..81041203,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11961345	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961389	0.80[ASN][1000 genomes]
rs11961412	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11963923	0.89[AFR][1000 genomes]
rs11967081	0.80[ASN][1000 genomes]
rs11968568	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28827323	0.82[ASN][1000 genomes]
rs28839510	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28888768	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35629704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3805862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805893	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805896	0.81[AMR][1000 genomes]
rs3812123	0.80[ASN][1000 genomes]
rs3812124	0.80[ASN][1000 genomes]
rs3828750	0.80[ASN][1000 genomes]
rs60566469	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61198482	0.81[AMR][1000 genomes]
rs61562479	0.91[EUR][1000 genomes]
rs6906392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73463518	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73463519	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73463522	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73463530	0.85[EUR][1000 genomes]
rs73463531	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73463536	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73463537	0.81[AMR][1000 genomes]
rs73463560	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73463596	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73463601	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73465590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73467507	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73467544	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1796319	chr6:81034505-81058025	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv16646	chr6:81040322-81055387	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81027000-81044600	Weak transcription	Aorta	Aorta
3	chr6:81029400-81079600	Weak transcription	HSMM	muscle
4	chr6:81033800-81070200	Weak transcription	Left Ventricle	heart
5	chr6:81036600-81041000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:81036800-81044600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:81037200-81041000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:81037200-81041200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:81037200-81041200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:81037400-81044800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:81037600-81042000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:81037600-81044400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:81038200-81041400	Weak transcription	Brain Anterior Caudate	brain
14	chr6:81038200-81044800	Weak transcription	Fetal Lung	lung
15	chr6:81038600-81040800	Weak transcription	Fetal Heart	heart
16	chr6:81038600-81044000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:81038800-81041200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:81039000-81041400	Weak transcription	Right Atrium	heart
19	chr6:81039200-81041200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:81039200-81042200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:81039200-81043200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:81039200-81045200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:81039400-81044200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:81039600-81040800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:81039600-81040800	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:81039600-81044800	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:81039800-81043200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:81040000-81041200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:81040600-81041000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:81040600-81041200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr6:81040600-81042200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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