Variant report

Variant	rs595494
Chromosome Location	chr6:80971962-80971963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80967484..80970189-chr6:80971106..80972726,2	MCF-7	breast:
2	chr6:80956342..80959082-chr6:80970604..80972949,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1179571	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12525046	0.86[CEU][hapmap];0.85[YRI][hapmap]
rs12526876	0.86[CEU][hapmap];0.85[YRI][hapmap]
rs12527244	0.85[CEU][hapmap]
rs12527712	0.86[CEU][hapmap];0.84[YRI][hapmap]
rs12528770	0.83[CEU][hapmap]
rs12529191	0.86[CEU][hapmap]
rs12530290	0.84[CEU][hapmap]
rs1341280	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs3792998	1.00[CHB][hapmap]
rs3805895	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs4706829	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4706830	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57214328	0.81[ASN][1000 genomes]
rs584372	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58465865	0.81[ASN][1000 genomes]
rs585506	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[EUR][1000 genomes]
rs587999	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs588009	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[EUR][1000 genomes]
rs590686	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs598234	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs604732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60860919	0.81[ASN][1000 genomes]
rs610946	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs612208	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs613577	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs623085	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs627968	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs631314	0.83[EUR][1000 genomes]
rs631367	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs634499	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs636499	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs638921	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs640568	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs641229	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs642943	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs644666	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6454149	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs646369	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs649148	0.95[EUR][1000 genomes]
rs651065	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs652576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs669420	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs670119	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs670390	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs671614	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs677134	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs685902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs687702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs688442	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs6906403	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6908084	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6924011	0.90[CEU][hapmap]
rs723308	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs764442	0.86[CEU][hapmap];0.85[YRI][hapmap]
rs7755034	0.85[CEU][hapmap]
rs7757610	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs7771726	0.85[CEU][hapmap];0.91[YRI][hapmap]
rs7772483	0.86[CEU][hapmap];0.85[YRI][hapmap]
rs806781	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs806839	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs811567	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs932463	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9443739	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9688535	0.85[CEU][hapmap];0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80914600-80980400	Weak transcription	Ovary	ovary
2	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:80924000-80976000	Weak transcription	HSMM	muscle
4	chr6:80939000-80974800	Weak transcription	Primary T cells from cord blood	blood
5	chr6:80944000-80982800	Weak transcription	Pancreas	Pancrea
6	chr6:80944600-80977200	Weak transcription	Fetal Stomach	stomach
7	chr6:80957600-80975200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:80960600-80997400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:80963000-80972600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:80964800-80972600	Weak transcription	Fetal Intestine Small	intestine
11	chr6:80964800-81002600	Weak transcription	Liver	Liver
12	chr6:80967600-80976200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:80968400-81006800	Weak transcription	Psoas Muscle	Psoas
14	chr6:80969000-80972000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:80971800-80974600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links