Variant report

Variant	rs72898515
Chromosome Location	chr4:110973368-110973369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110970906..110974111-chr4:111117676..111120910,5	MCF-7	breast:
2	chr4:110972268..110974968-chr4:110975889..110979455,3	K562	blood:
3	chr4:110972756..110975536-chr4:111115190..111118473,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170522	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17041277	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7662161	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv595145	chr4:110969572-110982248	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110963400-110976200	Weak transcription	Fetal Intestine Large	intestine
2	chr4:110963800-110974600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:110964600-110975200	Weak transcription	Fetal Heart	heart
4	chr4:110964600-110976600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:110964600-110976600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:110964600-110981000	Weak transcription	Adipose Nuclei	Adipose
7	chr4:110964600-110981800	Weak transcription	Brain Anterior Caudate	brain
8	chr4:110964600-111004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:110964800-110976400	Weak transcription	Fetal Kidney	kidney
10	chr4:110964800-110982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:110965000-110974200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:110965000-110982000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:110965200-110976600	Weak transcription	HSMMtube	muscle
14	chr4:110965200-110986600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:110965400-110994200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:110966800-110974000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:110966800-110982000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:110967600-110980000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:110967800-110976600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:110968000-110976600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:110968200-110974000	Weak transcription	Fetal Lung	lung
22	chr4:110968200-110976200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:110968200-110976400	Weak transcription	Brain Substantia Nigra	brain
24	chr4:110968200-110976600	Weak transcription	NHDF-Ad	bronchial
25	chr4:110968600-110976600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr4:110968600-110980800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:110969400-110974800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr4:110969400-110975800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:110969600-110973400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:110970000-110976600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:110970200-110974200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:110970600-110976200	Weak transcription	Left Ventricle	heart
33	chr4:110970800-110973400	Strong transcription	K562	blood
34	chr4:110970800-110974000	Strong transcription	Dnd41	blood
35	chr4:110970800-110995800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr4:110971200-110973600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:110971200-110974400	Strong transcription	HepG2	liver
38	chr4:110971200-110976400	Weak transcription	Small Intestine	intestine
39	chr4:110971200-110980200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr4:110971400-110974600	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr4:110971400-110976200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr4:110971400-110976200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr4:110971600-110976200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr4:110971600-110976400	Weak transcription	Brain Angular Gyrus	brain
45	chr4:110971800-110976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr4:110971800-110976400	Weak transcription	Fetal Muscle Leg	muscle
47	chr4:110971800-110976600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:110971800-110976600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr4:110971800-110976600	Weak transcription	Brain Hippocampus Middle	brain
50	chr4:110971800-110981200	Weak transcription	NHLF	lung

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