Variant report

Variant	rs7662161
Chromosome Location	chr4:110975433-110975434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110972756..110975536-chr4:111115190..111118473,3	MCF-7	breast:
2	chr4:110975222..110976850-chr4:111118540..111120184,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170522	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17041292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17041315	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs17041323	0.88[MEX][hapmap]
rs17041324	0.91[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs3813825	0.89[CEU][hapmap]
rs72898515	0.81[AFR][1000 genomes]
rs7684686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690709	0.94[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv595145	chr4:110969572-110982248	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110963400-110976200	Weak transcription	Fetal Intestine Large	intestine
2	chr4:110964600-110976600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:110964600-110976600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:110964600-110981000	Weak transcription	Adipose Nuclei	Adipose
5	chr4:110964600-110981800	Weak transcription	Brain Anterior Caudate	brain
6	chr4:110964600-111004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:110964800-110976400	Weak transcription	Fetal Kidney	kidney
8	chr4:110964800-110982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:110965000-110982000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:110965200-110976600	Weak transcription	HSMMtube	muscle
11	chr4:110965200-110986600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:110965400-110994200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:110966800-110982000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:110967600-110980000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:110967800-110976600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:110968000-110976600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:110968200-110976200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:110968200-110976400	Weak transcription	Brain Substantia Nigra	brain
19	chr4:110968200-110976600	Weak transcription	NHDF-Ad	bronchial
20	chr4:110968600-110976600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:110968600-110980800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:110969400-110975800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:110970000-110976600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:110970600-110976200	Weak transcription	Left Ventricle	heart
25	chr4:110970800-110995800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr4:110971200-110976400	Weak transcription	Small Intestine	intestine
27	chr4:110971200-110980200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:110971400-110976200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr4:110971400-110976200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr4:110971600-110976200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:110971600-110976400	Weak transcription	Brain Angular Gyrus	brain
32	chr4:110971800-110976400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr4:110971800-110976400	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:110971800-110976600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:110971800-110976600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:110971800-110976600	Weak transcription	Brain Hippocampus Middle	brain
37	chr4:110971800-110981200	Weak transcription	NHLF	lung
38	chr4:110971800-110981600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr4:110971800-110992800	Weak transcription	Fetal Stomach	stomach
40	chr4:110972000-110976000	Weak transcription	Liver	Liver
41	chr4:110972200-110976000	Weak transcription	GM12878-XiMat	blood
42	chr4:110972200-110981000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr4:110972400-110976600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:110972600-110980600	Weak transcription	HUVEC	blood vessel
45	chr4:110972800-110976600	Weak transcription	Aorta	Aorta
46	chr4:110972800-110977800	Weak transcription	HSMM	muscle
47	chr4:110972800-110981400	Weak transcription	Gastric	stomach
48	chr4:110973000-110976000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:110973000-110976000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:110973000-110976000	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links