Variant report

Variant	rs7690709
Chromosome Location	chr4:110976538-110976539
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110975742..110978325-chr4:111114327..111116572,2	K562	blood:
2	chr4:110975222..110976850-chr4:111118540..111120184,2	MCF-7	breast:
3	chr4:110972268..110974968-chr4:110975889..110979455,3	K562	blood:

Variant related genes	Relation type
ENSG00000170522	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17041292	0.81[AMR][1000 genomes]
rs17041323	0.81[CHB][hapmap];0.90[CHD][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]
rs17041324	0.82[MEX][hapmap]
rs3813825	0.83[EUR][1000 genomes]
rs7662161	0.94[MEX][hapmap]
rs7684686	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv595145	chr4:110969572-110982248	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110964600-110976600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:110964600-110976600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:110964600-110981000	Weak transcription	Adipose Nuclei	Adipose
4	chr4:110964600-110981800	Weak transcription	Brain Anterior Caudate	brain
5	chr4:110964600-111004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:110964800-110982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:110965000-110982000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:110965200-110976600	Weak transcription	HSMMtube	muscle
9	chr4:110965200-110986600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:110965400-110994200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:110966800-110982000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:110967600-110980000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:110967800-110976600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:110968000-110976600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:110968200-110976600	Weak transcription	NHDF-Ad	bronchial
16	chr4:110968600-110976600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:110968600-110980800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:110970000-110976600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:110970800-110995800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:110971200-110980200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:110971800-110976600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:110971800-110976600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:110971800-110976600	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:110971800-110981200	Weak transcription	NHLF	lung
25	chr4:110971800-110981600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr4:110971800-110992800	Weak transcription	Fetal Stomach	stomach
27	chr4:110972200-110981000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr4:110972400-110976600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:110972600-110980600	Weak transcription	HUVEC	blood vessel
30	chr4:110972800-110976600	Weak transcription	Aorta	Aorta
31	chr4:110972800-110977800	Weak transcription	HSMM	muscle
32	chr4:110972800-110981400	Weak transcription	Gastric	stomach
33	chr4:110973000-110976600	Weak transcription	Osteobl	bone
34	chr4:110973000-110978200	Weak transcription	Fetal Brain Female	brain
35	chr4:110973000-110980800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr4:110973000-110981400	Weak transcription	Esophagus	oesophagus
37	chr4:110973000-110991000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr4:110973000-111009200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr4:110973200-110976600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:110973200-110976800	Weak transcription	NH-A	brain
41	chr4:110973200-110977800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:110973200-110979600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr4:110973200-110979600	Weak transcription	HMEC	breast
44	chr4:110973400-110980400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr4:110973400-110982200	Weak transcription	K562	blood
46	chr4:110973400-110992400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr4:110974200-110976600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:110974400-110990600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr4:110974600-110977000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr4:110974600-110992600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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