Variant report

Variant	rs72899448
Chromosome Location	chr3:80677604-80677605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:56707583..56710440-chr3:80675624..80678665,17	K562	blood:
2	chr17:56707663..56711922-chr3:80675625..80678686,47	MCF-7	breast:
3	chr17:56708245..56709624-chr3:80676622..80677686,211	MCF-7	breast:
4	chr17:56708616..56709587-chr3:80676624..80677684,14	NB4	blood:
5	chr17:56702140..56703748-chr3:80675685..80678645,2	MCF-7	breast:
6	chr17:56705518..56710413-chr3:80675622..80678686,101	MCF-7	breast:
7	chr17:56594883..56597200-chr3:80675665..80678626,2	K562	blood:
8	chr17:56736245..56738976-chr3:80677124..80678684,2	MCF-7	breast:
9	chr17:56734902..56738001-chr3:80677142..80678686,4	K562	blood:
10	chr17:56708809..56709539-chr3:80676642..80677684,6	Hela-S3	cervix:
11	chr17:56708399..56709680-chr3:80676622..80677717,127	MCF-7	breast:
12	chr17:56708636..56709461-chr3:80677123..80677664,11	MCF-7	breast:
13	chr17:56708416..56709700-chr3:80676622..80677685,55	HCT-116	colon:
14	chr17:56708656..56709177-chr3:80677124..80677665,2	MCF-7	breast:
15	chr17:56654336..56655943-chr3:80677127..80678644,2	K562	blood:
16	chr17:56716338..56717980-chr3:80675665..80678624,2	MCF-7	breast:
17	chr17:56705485..56710914-chr3:80675644..80678685,20	K562	blood:

No data

Variant related genes	Relation type
ENSG00000108389	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000266826	Chromatin interaction
ENSG00000264672	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs57968670	1.00[AMR][1000 genomes]
rs58198244	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59014824	1.00[AMR][1000 genomes]
rs60793674	1.00[AMR][1000 genomes]
rs72895316	1.00[AMR][1000 genomes]
rs72895396	1.00[AMR][1000 genomes]
rs72895402	1.00[AMR][1000 genomes]
rs72899451	1.00[AFR][1000 genomes]
rs72901474	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72901485	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72903044	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72903063	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72903081	1.00[AMR][1000 genomes]
rs72907011	1.00[AMR][1000 genomes]
rs72907039	1.00[AMR][1000 genomes]
rs72907068	1.00[AMR][1000 genomes]
rs72907070	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014658	chr3:80035786-80716259	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv536599	chr3:80035786-80716259	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997720	chr3:80035786-80745662	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1004115	chr3:80349665-81043308	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv536601	chr3:80349665-81043308	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1067580	chr3:80416729-81043307	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv492220	chr3:80416729-81043307	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1000592	chr3:80422155-81044175	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv527598	chr3:80585455-81250663	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv877037	chr3:80611818-80811252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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