Variant report

Variant	rs72903063
Chromosome Location	chr3:80818287-80818288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58198244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59014824	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60793674	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72895396	1.00[AMR][1000 genomes]
rs72895402	1.00[AMR][1000 genomes]
rs72899448	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72899451	0.80[AFR][1000 genomes]
rs72901474	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72901485	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72903044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72903081	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004115	chr3:80349665-81043308	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv536601	chr3:80349665-81043308	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1067580	chr3:80416729-81043307	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv492220	chr3:80416729-81043307	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1000592	chr3:80422155-81044175	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv527598	chr3:80585455-81250663	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv877038	chr3:80781726-80984958	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1846627	chr3:80791380-80912454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80816200-80822200	Active TSS	K562	blood
2	chr3:80816800-80820400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:80817000-80821200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr3:80817200-80819400	Active TSS	HUVEC	blood vessel
5	chr3:80817200-80819800	Active TSS	Placenta	Placenta
6	chr3:80817400-80818800	Weak transcription	Stomach Mucosa	stomach
7	chr3:80817400-80820800	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr3:80817600-80818600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:80818000-80820800	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr3:80818200-80820600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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