Variant report

Variant	rs729009
Chromosome Location	chr9:93071368-93071369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs736253	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv482531	chr9:92907692-93096360	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93068200-93071600	Enhancers	Fetal Muscle Leg	muscle
2	chr9:93068200-93071600	Enhancers	Fetal Stomach	stomach
3	chr9:93069400-93074000	Enhancers	Fetal Intestine Small	intestine
4	chr9:93069600-93072800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:93069600-93074800	Enhancers	Fetal Intestine Large	intestine
6	chr9:93070000-93081400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:93070800-93071600	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr9:93070800-93072200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr9:93070800-93072600	Weak transcription	Pancreas	Pancrea
10	chr9:93070800-93073400	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr9:93071000-93071400	Enhancers	Colonic Mucosa	Colon
12	chr9:93071000-93071600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:93071000-93071800	Enhancers	Fetal Muscle Trunk	muscle
14	chr9:93071000-93072200	Weak transcription	Fetal Kidney	kidney
15	chr9:93071000-93072800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr9:93071200-93071400	Bivalent Enhancer	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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