Variant report

Variant	rs72901229
Chromosome Location	chr4:100101977-100101978
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28626993	0.88[AFR][1000 genomes]
rs34871400	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1002927	chr4:99952472-100148690	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1005446	chr4:99988287-100121669	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv537196	chr4:99988287-100121669	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1002574	chr4:100023999-100133693	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3355763	chr4:100070566-100376814	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv879657	chr4:100082154-100139366	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100098600-100102200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:100098600-100113400	Weak transcription	Aorta	Aorta
3	chr4:100098600-100113400	Weak transcription	Ovary	ovary
4	chr4:100099000-100112800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:100100800-100102000	Enhancers	Stomach Smooth Muscle	stomach
6	chr4:100100800-100102200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:100101000-100102000	Enhancers	Fetal Stomach	stomach
8	chr4:100101000-100102000	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:100101000-100102000	Enhancers	HMEC	breast
10	chr4:100101000-100102600	Enhancers	Colon Smooth Muscle	Colon
11	chr4:100101000-100102800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:100101200-100102000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:100101200-100102600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:100101200-100102800	Enhancers	Fetal Muscle Leg	muscle
15	chr4:100101400-100102000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:100101400-100102000	Enhancers	NHLF	lung
17	chr4:100101400-100102200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:100101400-100102200	Enhancers	Fetal Lung	lung
19	chr4:100101400-100102600	Enhancers	NHDF-Ad	bronchial
20	chr4:100101400-100102800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:100101400-100106800	Weak transcription	Liver	Liver
22	chr4:100101600-100102000	Enhancers	NHEK	skin
23	chr4:100101600-100103200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:100101600-100109200	Weak transcription	Pancreas	Pancrea
25	chr4:100101800-100102200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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