Variant report

Variant	rs72905801
Chromosome Location	chr2:67898999-67899000
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2163363	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2163364	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861709	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58909924	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6732623	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9678580	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv834250	chr2:67897722-68051532	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3417796	chr2:67897748-67901146	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3417694	chr2:67897748-67901346	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3350211	chr2:67897948-67901146	Genic enhancers Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67893200-67903600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr2:67893600-67903000	Weak transcription	Left Ventricle	heart
3	chr2:67893800-67899200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:67894000-67899000	Weak transcription	Right Ventricle	heart
5	chr2:67894800-67899200	Weak transcription	Fetal Lung	lung
6	chr2:67895600-67899000	Weak transcription	Right Atrium	heart
7	chr2:67896600-67899200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:67897200-67900400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr2:67897600-67899200	Weak transcription	Fetal Brain Male	brain
10	chr2:67897600-67899200	Enhancers	Fetal Intestine Large	intestine
11	chr2:67898000-67899200	Enhancers	HepG2	liver
12	chr2:67898000-67899400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:67898400-67899000	Weak transcription	Psoas Muscle	Psoas
14	chr2:67898400-67899200	Weak transcription	Fetal Kidney	kidney
15	chr2:67898400-67899400	Weak transcription	Spleen	Spleen
16	chr2:67898600-67899200	Enhancers	GM12878-XiMat	blood
17	chr2:67898800-67899000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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