Variant report

Variant	rs72905937
Chromosome Location	chr18:39163833-39163834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10163840	0.83[EUR][1000 genomes]
rs10163854	0.97[EUR][1000 genomes]
rs10502770	0.92[EUR][1000 genomes]
rs10502771	0.89[EUR][1000 genomes]
rs10502772	0.96[EUR][1000 genomes]
rs11875076	0.91[EUR][1000 genomes]
rs12968299	1.00[ASN][1000 genomes]
rs13381575	0.88[EUR][1000 genomes]
rs1368833	0.84[EUR][1000 genomes]
rs1433929	0.84[EUR][1000 genomes]
rs1560844	0.87[EUR][1000 genomes]
rs16975000	0.90[EUR][1000 genomes]
rs16975004	0.90[EUR][1000 genomes]
rs16975007	0.90[EUR][1000 genomes]
rs16975010	0.92[EUR][1000 genomes]
rs16975012	0.90[EUR][1000 genomes]
rs16975017	0.90[EUR][1000 genomes]
rs16975021	0.92[EUR][1000 genomes]
rs16975022	0.92[EUR][1000 genomes]
rs16975025	0.92[EUR][1000 genomes]
rs16975049	0.88[EUR][1000 genomes]
rs17597349	1.00[ASN][1000 genomes]
rs17656030	1.00[ASN][1000 genomes]
rs1942063	0.89[EUR][1000 genomes]
rs1942065	0.88[EUR][1000 genomes]
rs1942069	0.92[EUR][1000 genomes]
rs1942070	0.92[EUR][1000 genomes]
rs1942072	1.00[ASN][1000 genomes]
rs2156006	0.88[EUR][1000 genomes]
rs2315174	0.88[EUR][1000 genomes]
rs2587614	1.00[ASN][1000 genomes]
rs2587617	1.00[ASN][1000 genomes]
rs2587630	1.00[ASN][1000 genomes]
rs2587631	1.00[ASN][1000 genomes]
rs2587640	1.00[ASN][1000 genomes]
rs2587641	1.00[ASN][1000 genomes]
rs2587643	1.00[ASN][1000 genomes]
rs2587644	1.00[ASN][1000 genomes]
rs2587645	1.00[ASN][1000 genomes]
rs2587646	1.00[ASN][1000 genomes]
rs2587647	1.00[ASN][1000 genomes]
rs2612320	1.00[ASN][1000 genomes]
rs2612321	1.00[ASN][1000 genomes]
rs2612322	1.00[ASN][1000 genomes]
rs2612337	1.00[ASN][1000 genomes]
rs2612341	1.00[ASN][1000 genomes]
rs2612345	1.00[ASN][1000 genomes]
rs2612346	1.00[ASN][1000 genomes]
rs2612347	1.00[ASN][1000 genomes]
rs2612349	1.00[ASN][1000 genomes]
rs2612350	1.00[ASN][1000 genomes]
rs2612351	1.00[ASN][1000 genomes]
rs2703169	1.00[ASN][1000 genomes]
rs2703170	1.00[ASN][1000 genomes]
rs28374486	0.95[EUR][1000 genomes]
rs28414473	0.95[EUR][1000 genomes]
rs2848747	1.00[ASN][1000 genomes]
rs2848748	1.00[ASN][1000 genomes]
rs2848757	1.00[ASN][1000 genomes]
rs2848769	1.00[ASN][1000 genomes]
rs34177537	1.00[ASN][1000 genomes]
rs34817685	1.00[ASN][1000 genomes]
rs35462279	0.90[EUR][1000 genomes]
rs4404160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55797333	0.89[EUR][1000 genomes]
rs55891807	1.00[ASN][1000 genomes]
rs56274716	1.00[ASN][1000 genomes]
rs56324213	1.00[ASN][1000 genomes]
rs56812327	0.89[EUR][1000 genomes]
rs57249168	0.89[EUR][1000 genomes]
rs58350157	0.86[EUR][1000 genomes]
rs6507424	0.89[EUR][1000 genomes]
rs6507425	0.96[EUR][1000 genomes]
rs6507428	0.84[EUR][1000 genomes]
rs66959060	1.00[ASN][1000 genomes]
rs7229356	0.95[EUR][1000 genomes]
rs7237488	0.84[EUR][1000 genomes]
rs7238489	1.00[ASN][1000 genomes]
rs7238895	1.00[ASN][1000 genomes]
rs7244165	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892179	1.00[ASN][1000 genomes]
rs72903956	1.00[ASN][1000 genomes]
rs72903960	1.00[ASN][1000 genomes]
rs72903968	1.00[ASN][1000 genomes]
rs72903976	1.00[ASN][1000 genomes]
rs72903977	1.00[ASN][1000 genomes]
rs72903981	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72903999	1.00[ASN][1000 genomes]
rs72905909	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72905915	0.84[EUR][1000 genomes]
rs72905919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905923	0.90[EUR][1000 genomes]
rs72905924	0.90[EUR][1000 genomes]
rs72905927	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905948	0.90[EUR][1000 genomes]
rs72905963	0.89[EUR][1000 genomes]
rs72905965	0.89[EUR][1000 genomes]
rs72905967	0.89[EUR][1000 genomes]
rs72905973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905979	0.89[EUR][1000 genomes]
rs72905981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905986	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905989	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72907817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907819	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72907821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907830	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72907836	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72907842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907848	0.89[EUR][1000 genomes]
rs72907850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907853	1.00[ASN][1000 genomes]
rs72907854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907855	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907861	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72907862	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72909913	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72909916	0.82[EUR][1000 genomes]
rs72909919	1.00[ASN][1000 genomes]
rs72909936	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72909959	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs734357	0.88[EUR][1000 genomes]
rs73450796	0.88[EUR][1000 genomes]
rs8087434	0.89[EUR][1000 genomes]
rs8087485	0.88[EUR][1000 genomes]
rs8098315	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098394	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9949338	0.84[EUR][1000 genomes]
rs9956251	0.85[EUR][1000 genomes]
rs9965809	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv2267	chr18:39123940-39169583	Enhancers Weak transcription Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39160800-39167600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:39160800-39168400	Weak transcription	Fetal Heart	heart
3	chr18:39161000-39168600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:39163800-39164000	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links