Variant report

Variant	rs72909916
Chromosome Location	chr18:39208624-39208625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10502772	0.81[EUR][1000 genomes]
rs11082245	1.00[ASN][1000 genomes]
rs28374486	0.82[EUR][1000 genomes]
rs28414473	0.82[EUR][1000 genomes]
rs4404160	0.82[EUR][1000 genomes]
rs6507425	0.81[EUR][1000 genomes]
rs7229356	0.82[EUR][1000 genomes]
rs7244165	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72905919	0.82[EUR][1000 genomes]
rs72905927	0.82[EUR][1000 genomes]
rs72905935	0.82[EUR][1000 genomes]
rs72905937	0.82[EUR][1000 genomes]
rs72905951	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72905973	0.82[EUR][1000 genomes]
rs72905981	0.82[EUR][1000 genomes]
rs72905986	0.82[EUR][1000 genomes]
rs72905989	0.82[EUR][1000 genomes]
rs72907804	0.82[EUR][1000 genomes]
rs72907808	0.82[EUR][1000 genomes]
rs72907815	0.82[EUR][1000 genomes]
rs72907817	0.82[EUR][1000 genomes]
rs72907819	0.82[EUR][1000 genomes]
rs72907821	0.82[EUR][1000 genomes]
rs72907830	0.82[EUR][1000 genomes]
rs72907836	0.82[EUR][1000 genomes]
rs72907842	0.82[EUR][1000 genomes]
rs72907845	0.82[EUR][1000 genomes]
rs72907847	0.82[EUR][1000 genomes]
rs72907850	0.82[EUR][1000 genomes]
rs72907851	0.82[EUR][1000 genomes]
rs72907855	0.82[EUR][1000 genomes]
rs72907861	0.83[EUR][1000 genomes]
rs72907862	0.83[EUR][1000 genomes]
rs72909913	0.83[EUR][1000 genomes]
rs72909936	0.83[EUR][1000 genomes]
rs72909959	0.83[EUR][1000 genomes]
rs8098315	0.82[EUR][1000 genomes]
rs8098394	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39185000-39209600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:39190800-39210200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:39204800-39211400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:39206000-39210200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr18:39206000-39210200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:39206200-39210400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr18:39206400-39210200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr18:39206400-39210400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr18:39207000-39210200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr18:39207000-39211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr18:39208200-39209400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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