Variant report

Variant	rs72908218
Chromosome Location	chr2:173726655-173726656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173706643..173709122-chr2:173725202..173727159,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10514633	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1104635	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17704262	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17704332	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17704976	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17705358	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17705390	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17705429	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17705626	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17705739	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17705834	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17705852	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17706174	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17706349	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17706854	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17706880	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17755063	0.82[EUR][1000 genomes]
rs17755348	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17756405	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17756703	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17756739	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17756834	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17756942	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17757877	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2247800	0.93[ASN][1000 genomes]
rs72900203	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72900214	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72900223	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72900226	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72900228	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72900229	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72900230	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72900235	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72900240	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72900243	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72900248	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72902287	0.82[EUR][1000 genomes]
rs72902296	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72906101	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72906193	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72906194	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72906196	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908114	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908118	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908120	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72908147	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908174	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908191	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908195	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908196	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908198	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908199	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908213	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908214	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908215	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908222	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908226	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908230	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72908233	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72908246	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72908248	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72908250	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72908256	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72908260	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72908274	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72908277	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72908283	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72908285	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7420491	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs951314	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs951315	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173722200-173727400	Enhancers	Fetal Heart	heart
2	chr2:173723400-173728800	Weak transcription	Pancreas	Pancrea
3	chr2:173724200-173727800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:173724400-173727800	Enhancers	Fetal Stomach	stomach
5	chr2:173724800-173727800	Enhancers	Fetal Lung	lung
6	chr2:173725000-173728000	Weak transcription	Fetal Intestine Small	intestine
7	chr2:173725200-173727400	Weak transcription	Adipose Nuclei	Adipose
8	chr2:173725200-173728000	Weak transcription	Fetal Intestine Large	intestine
9	chr2:173725600-173726800	Enhancers	Right Ventricle	heart
10	chr2:173725600-173727600	Enhancers	Brain Germinal Matrix	brain
11	chr2:173725600-173727800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:173725800-173726800	Enhancers	Left Ventricle	heart
13	chr2:173725800-173727000	Enhancers	Fetal Muscle Leg	muscle
14	chr2:173725800-173727800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:173725800-173728600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:173726000-173726800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:173726000-173726800	Enhancers	Psoas Muscle	Psoas
18	chr2:173726000-173727000	Enhancers	Fetal Brain Female	brain
19	chr2:173726000-173727800	Enhancers	Brain Anterior Caudate	brain
20	chr2:173726000-173734400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:173726200-173727200	Enhancers	Brain Substantia Nigra	brain
22	chr2:173726200-173727400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:173726200-173727400	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:173726200-173727800	Enhancers	Right Atrium	heart
25	chr2:173726200-173734400	Weak transcription	NHEK	skin
26	chr2:173726200-173734600	Weak transcription	HUVEC	blood vessel
27	chr2:173726400-173726800	Active TSS	Brain Angular Gyrus	brain
28	chr2:173726400-173726800	Enhancers	Fetal Muscle Trunk	muscle
29	chr2:173726400-173726800	Enhancers	Ovary	ovary
30	chr2:173726400-173727400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr2:173726600-173726800	Enhancers	Gastric	stomach
32	chr2:173726600-173727000	Enhancers	Hela-S3	cervix
33	chr2:173726600-173727200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr2:173726600-173727800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr2:173726600-173727800	Enhancers	Skeletal Muscle Male	skeletal muscle

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