Variant report

Variant	rs72908230
Chromosome Location	chr2:173734977-173734978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10514633	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1104635	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17704262	0.90[EUR][1000 genomes]
rs17704332	0.90[EUR][1000 genomes]
rs17704976	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17705358	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17705390	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17705429	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17705626	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17705739	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17705834	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17705852	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17706174	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17706349	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17706854	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17706880	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17755063	0.90[EUR][1000 genomes]
rs17755348	0.90[EUR][1000 genomes]
rs17756405	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17756703	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17756739	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17756834	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17756942	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17757877	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72900203	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72900214	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72900223	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72900226	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72900228	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72900229	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72900230	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72900235	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72900240	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72900243	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72900248	1.00[EUR][1000 genomes]
rs72902287	0.90[EUR][1000 genomes]
rs72902296	0.90[EUR][1000 genomes]
rs72906193	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906194	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906196	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908114	0.90[EUR][1000 genomes]
rs72908118	0.90[EUR][1000 genomes]
rs72908120	0.90[EUR][1000 genomes]
rs72908147	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72908174	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72908191	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72908195	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72908196	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72908198	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72908199	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72908213	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908214	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908215	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908218	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72908222	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908226	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908233	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908246	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908248	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908250	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908256	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908260	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908274	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908277	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908283	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908285	1.00[EUR][1000 genomes]
rs7420491	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs951314	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs951315	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173726800-173753600	Weak transcription	Brain Angular Gyrus	brain
2	chr2:173729000-173735000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:173729200-173737000	Weak transcription	Fetal Intestine Small	intestine
4	chr2:173734400-173736200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:173734400-173736200	Enhancers	NHEK	skin
6	chr2:173734400-173747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:173734600-173735000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:173734600-173735000	Enhancers	Brain Anterior Caudate	brain
9	chr2:173734600-173735000	Enhancers	HUVEC	blood vessel
10	chr2:173734600-173736000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:173734800-173735200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links