Variant report

Variant	rs72908757
Chromosome Location	chr4:100577471-100577472
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2718683	0.82[AFR][1000 genomes]
rs72908744	0.82[AFR][1000 genomes]
rs72908752	1.00[AFR][1000 genomes]
rs72908758	1.00[AFR][1000 genomes]
rs72908760	1.00[AFR][1000 genomes]
rs72908761	1.00[AFR][1000 genomes]
rs72908762	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100567800-100579200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:100575800-100577600	Enhancers	Hela-S3	cervix
3	chr4:100575800-100579800	Weak transcription	Right Atrium	heart
4	chr4:100576000-100579400	Weak transcription	Psoas Muscle	Psoas
5	chr4:100576400-100577800	Enhancers	Fetal Muscle Trunk	muscle
6	chr4:100576600-100577600	Enhancers	Fetal Heart	heart
7	chr4:100576600-100578600	Enhancers	Fetal Muscle Leg	muscle
8	chr4:100576800-100579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:100577000-100579000	Active TSS	Right Ventricle	heart
10	chr4:100577000-100579400	Weak transcription	Brain Anterior Caudate	brain
11	chr4:100577000-100579800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:100577200-100578200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:100577200-100578200	Weak transcription	Ovary	ovary
14	chr4:100577200-100578200	Weak transcription	NHEK	skin
15	chr4:100577200-100578400	Weak transcription	HMEC	breast
16	chr4:100577200-100578600	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:100577200-100578600	Active TSS	Left Ventricle	heart
18	chr4:100577200-100579400	Weak transcription	HSMMtube	muscle
19	chr4:100577200-100580200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:100577200-100580600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr4:100577400-100578400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:100577400-100580800	Enhancers	Skeletal Muscle Female	skeletal muscle

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