Variant report

Variant	rs72908762
Chromosome Location	chr4:100580661-100580662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000138823	Chromatin interaction
ENSG00000145331	Chromatin interaction
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2035813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2130906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2130907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2718683	0.82[AFR][1000 genomes]
rs41275703	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41275705	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72908744	0.82[AFR][1000 genomes]
rs72908752	1.00[AFR][1000 genomes]
rs72908757	1.00[AFR][1000 genomes]
rs72908758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908760	1.00[AFR][1000 genomes]
rs72908761	1.00[AFR][1000 genomes]
rs72910622	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100577400-100580800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr4:100580000-100586000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:100580000-100600400	Weak transcription	Psoas Muscle	Psoas
4	chr4:100580200-100586000	Weak transcription	Ovary	ovary
5	chr4:100580400-100583000	Weak transcription	Fetal Heart	heart
6	chr4:100580600-100586600	Weak transcription	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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