Variant report

Variant	rs2130906
Chromosome Location	chr4:100516380-100516381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2035813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2130907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41275703	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41275705	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72908758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72908762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910622	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100507800-100533800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:100509800-100518200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:100511400-100520800	Strong transcription	Duodenum Mucosa	Duodenum
4	chr4:100511600-100517800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:100514000-100516400	Genic enhancers	Liver	Liver
6	chr4:100515000-100517000	Strong transcription	HepG2	liver
7	chr4:100515400-100518200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:100515800-100516800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:100516000-100516800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:100516200-100518000	Weak transcription	Fetal Intestine Small	intestine
11	chr4:100516200-100518800	Strong transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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