Variant report

Variant	rs72908990
Chromosome Location	chr2:53719150-53719151
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:53718351..53720003-chr2:53723225..53725281,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17044784	0.90[EUR][1000 genomes]
rs17044786	0.90[EUR][1000 genomes]
rs56720868	0.90[EUR][1000 genomes]
rs57814783	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545349	0.90[EUR][1000 genomes]
rs6545350	0.90[EUR][1000 genomes]
rs6704836	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6705194	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707087	1.00[ASN][1000 genomes]
rs6713068	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720273	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6722171	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727792	0.93[EUR][1000 genomes]
rs6741631	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745622	1.00[ASN][1000 genomes]
rs6756089	0.90[EUR][1000 genomes]
rs6759361	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6759454	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908978	1.00[ASN][1000 genomes]
rs72908995	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73937308	0.90[EUR][1000 genomes]
rs7595651	0.90[EUR][1000 genomes]
rs9784047	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9784059	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985549	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002145	chr2:53387912-53832213	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv535718	chr2:53387912-53832213	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv997401	chr2:53515629-53863347	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv999571	chr2:53690538-53775723	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1012754	chr2:53690538-53785037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv457873	chr2:53701324-53785037	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv582009	chr2:53701324-53785037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53717400-53719200	Enhancers	Brain Germinal Matrix	brain
2	chr2:53717400-53719400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:53718000-53724200	Weak transcription	Aorta	Aorta
4	chr2:53718200-53725200	Weak transcription	Brain Anterior Caudate	brain
5	chr2:53718200-53737600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:53718600-53723600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr2:53718600-53724200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:53718800-53724600	Weak transcription	Hela-S3	cervix
9	chr2:53719000-53719400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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