Variant report

Variant	rs72908978
Chromosome Location	chr2:53712240-53712241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11892725	0.90[EUR][1000 genomes]
rs17044841	0.87[EUR][1000 genomes]
rs55907222	0.87[EUR][1000 genomes]
rs55923674	0.93[EUR][1000 genomes]
rs57574639	0.87[EUR][1000 genomes]
rs57814783	1.00[ASN][1000 genomes]
rs61628104	0.93[EUR][1000 genomes]
rs6705194	1.00[ASN][1000 genomes]
rs6707087	1.00[ASN][1000 genomes]
rs6713068	1.00[ASN][1000 genomes]
rs6722171	1.00[ASN][1000 genomes]
rs6741631	1.00[ASN][1000 genomes]
rs6745622	1.00[ASN][1000 genomes]
rs6759454	1.00[ASN][1000 genomes]
rs72908927	0.93[EUR][1000 genomes]
rs72908990	1.00[ASN][1000 genomes]
rs72908995	1.00[ASN][1000 genomes]
rs73934291	0.93[EUR][1000 genomes]
rs9784047	1.00[ASN][1000 genomes]
rs9784059	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002145	chr2:53387912-53832213	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv535718	chr2:53387912-53832213	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv997401	chr2:53515629-53863347	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv999571	chr2:53690538-53775723	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1012754	chr2:53690538-53785037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv457873	chr2:53701324-53785037	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv582009	chr2:53701324-53785037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53712000-53712400	Weak transcription	Stomach Mucosa	stomach
2	chr2:53712000-53713000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:53712200-53717000	Weak transcription	Hela-S3	cervix

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