Variant report

Variant	rs73934291
Chromosome Location	chr2:53679388-53679389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11892725	0.84[EUR][1000 genomes]
rs17044784	0.87[ASN][1000 genomes]
rs17044841	0.81[EUR][1000 genomes]
rs55907222	0.93[EUR][1000 genomes]
rs55923674	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57574639	0.93[EUR][1000 genomes]
rs59569722	0.87[ASN][1000 genomes]
rs61628104	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751127	1.00[ASN][1000 genomes]
rs72908905	0.87[ASN][1000 genomes]
rs72908927	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908932	1.00[ASN][1000 genomes]
rs72908943	1.00[ASN][1000 genomes]
rs72908978	0.93[EUR][1000 genomes]
rs7608988	0.87[ASN][1000 genomes]
rs985549	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002145	chr2:53387912-53832213	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv535718	chr2:53387912-53832213	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv997401	chr2:53515629-53863347	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3383918	chr2:53585059-53710179	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv984438	chr2:53649278-53685651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv20666	chr2:53671457-53687640	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53669600-53679800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:53673200-53680400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:53673800-53687200	Weak transcription	Hela-S3	cervix
4	chr2:53678000-53681200	Enhancers	Fetal Muscle Leg	muscle
5	chr2:53678600-53682800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:53679000-53680000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:53679200-53683600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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