Variant report

Variant	rs72910027
Chromosome Location	chr11:46276544-46276545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11605191	0.82[ASN][1000 genomes]
rs28755875	0.82[ASN][1000 genomes]
rs35671387	0.82[ASN][1000 genomes]
rs58301639	0.82[ASN][1000 genomes]
rs58678374	0.82[ASN][1000 genomes]
rs7104451	0.82[ASN][1000 genomes]
rs7113170	0.86[ASN][1000 genomes]
rs7116965	0.82[ASN][1000 genomes]
rs72910006	0.86[ASN][1000 genomes]
rs7926726	0.82[ASN][1000 genomes]
rs7931075	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv308	chr11:46242287-46287542	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46265600-46281600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:46271200-46286600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:46276000-46277800	Weak transcription	Stomach Mucosa	stomach
4	chr11:46276200-46277800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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