Variant report

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr11:46255708-46256190	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:46254488..46256449-chr11:46407890..46409508,2	K562	blood:
2	chr11:46139740..46148810-chr11:46253862..46264263,27	K562	blood:
3	chr11:46252501..46256449-chr11:46405288..46409508,5	K562	blood:
4	chr11:46256070..46259331-chr11:46275478..46278178,3	K562	blood:
5	chr11:46255797..46257646-chr11:46263436..46265012,2	MCF-7	breast:
6	chr11:46255391..46271183-chr11:46315085..46324739,29	K562	blood:
7	chr11:46243156..46245098-chr11:46255575..46258822,3	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11038851	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs11605191	1.00[ASN][1000 genomes]
rs12292649	0.86[AFR][1000 genomes]
rs28755875	1.00[ASN][1000 genomes]
rs35671387	1.00[ASN][1000 genomes]
rs58301639	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58678374	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105423	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7113170	0.96[ASN][1000 genomes]
rs7116965	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908086	0.82[ASN][1000 genomes]
rs72908089	0.86[ASN][1000 genomes]
rs72908091	0.86[ASN][1000 genomes]
rs72908092	0.86[ASN][1000 genomes]
rs72908096	0.86[ASN][1000 genomes]
rs72908098	0.86[ASN][1000 genomes]
rs72908102	0.86[ASN][1000 genomes]
rs72910006	0.96[ASN][1000 genomes]
rs72910027	0.82[ASN][1000 genomes]
rs7926726	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7931075	1.00[ASN][1000 genomes]
rs7943808	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv308	chr11:46242287-46287542	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7104451	NR1H3	cis	multi-tissue	Pritchard

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46251000-46258400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:46255400-46256400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:46255600-46256200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:46255600-46256400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:46255600-46256400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:46255600-46256400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:46255600-46256400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr11:46255600-46256400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:46255600-46256400	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr11:46255800-46256400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr11:46255800-46258600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:46256000-46256200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:46256000-46256200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr11:46256000-46256400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:46256000-46256400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:46256000-46256400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search: