Variant report
| Variant | rs72908102 |
|---|---|
| Chromosome Location | chr11:46251608-46251609 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10501317 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11605191 | 0.86[ASN][1000 genomes] |
| rs28755875 | 0.86[ASN][1000 genomes] |
| rs35671387 | 0.86[ASN][1000 genomes] |
| rs58301639 | 0.86[ASN][1000 genomes] |
| rs58678374 | 0.86[ASN][1000 genomes] |
| rs7104451 | 0.86[ASN][1000 genomes] |
| rs7113170 | 0.90[ASN][1000 genomes] |
| rs7116965 | 0.86[ASN][1000 genomes] |
| rs72908033 | 0.87[EUR][1000 genomes] |
| rs72908034 | 0.87[EUR][1000 genomes] |
| rs72908050 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72908052 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72908065 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72908086 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72908089 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72908091 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72908092 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72908096 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72908098 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72910006 | 0.90[ASN][1000 genomes] |
| rs7926726 | 0.86[ASN][1000 genomes] |
| rs7931075 | 0.86[ASN][1000 genomes] |
| rs7943808 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051344 | chr11:46188818-46306447 | Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 47 gene(s) | inside rSNPs | diseases |
| 2 | nsv541028 | chr11:46188818-46306447 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 47 gene(s) | inside rSNPs | diseases |
| 3 | nsv308 | chr11:46242287-46287542 | Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:46250600-46253400 | Weak transcription | K562 | blood |
| 2 | chr11:46251000-46258400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
