Variant report
| Variant | rs72908065 |
|---|---|
| Chromosome Location | chr11:46214949-46214950 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254639 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10501317 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7113170 | 0.83[ASN][1000 genomes] |
| rs72906282 | 0.86[ASN][1000 genomes] |
| rs72908006 | 0.86[ASN][1000 genomes] |
| rs72908007 | 0.93[ASN][1000 genomes] |
| rs72908009 | 0.93[ASN][1000 genomes] |
| rs72908013 | 0.93[ASN][1000 genomes] |
| rs72908014 | 0.93[ASN][1000 genomes] |
| rs72908015 | 0.93[ASN][1000 genomes] |
| rs72908022 | 0.93[ASN][1000 genomes] |
| rs72908033 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72908034 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72908050 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72908052 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72908086 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72908089 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72908091 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72908092 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72908096 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72908098 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72908102 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72910006 | 0.83[ASN][1000 genomes] |
| rs7943808 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051344 | chr11:46188818-46306447 | Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 47 gene(s) | inside rSNPs | diseases |
| 2 | nsv541028 | chr11:46188818-46306447 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 47 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
