Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:46203646..46205829-chr11:46224777..46226347,2	MCF-7	breast:
2	chr11:46203794..46206561-chr11:46217960..46220507,2	MCF-7	breast:
3	chr11:46193486..46195266-chr11:46204175..46206538,3	K562	blood:
4	chr11:46198593..46200821-chr11:46203465..46206203,2	K562	blood:

Variant related genes	Relation type
ENSG00000255314	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10501317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113170	0.83[ASN][1000 genomes]
rs72906282	0.86[ASN][1000 genomes]
rs72908006	0.86[ASN][1000 genomes]
rs72908007	0.93[ASN][1000 genomes]
rs72908009	0.93[ASN][1000 genomes]
rs72908013	0.93[ASN][1000 genomes]
rs72908014	0.93[ASN][1000 genomes]
rs72908015	0.93[ASN][1000 genomes]
rs72908022	0.93[ASN][1000 genomes]
rs72908033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72908034	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908086	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72908089	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908091	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908092	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908096	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908098	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72908102	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72910006	0.83[ASN][1000 genomes]
rs7943808	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46204800-46206000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
2	chr11:46204800-46206200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:46204800-46206200	Enhancers	NH-A	brain
4	chr11:46205000-46206200	Enhancers	HMEC	breast
5	chr11:46205000-46206200	Enhancers	Osteobl	bone
6	chr11:46205000-46206400	Enhancers	NHEK	skin
7	chr11:46205200-46205800	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:46205200-46206200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:46205200-46206200	Enhancers	HSMM	muscle
10	chr11:46205400-46206200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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