Variant report

Variant	rs72911308
Chromosome Location	chr2:190984413-190984414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190975771..190978019-chr2:190984162..190986719,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6710331	0.81[AMR][1000 genomes]
rs72911310	0.88[ASN][1000 genomes]
rs785225	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190970800-190985400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:190976000-190987200	Weak transcription	Psoas Muscle	Psoas
3	chr2:190983800-190984800	Active TSS	Brain Anterior Caudate	brain
4	chr2:190983800-190985000	Active TSS	Brain Substantia Nigra	brain
5	chr2:190983800-190985000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr2:190983800-190985200	Active TSS	Right Atrium	heart
7	chr2:190984000-190984600	Active TSS	Brain Cingulate Gyrus	brain
8	chr2:190984000-190984600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:190984000-190984600	Active TSS	Monocytes-CD14+_RO01746	blood
10	chr2:190984000-190984800	Active TSS	NHEK	skin
11	chr2:190984000-190985000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:190984000-190985000	Active TSS	H9 Cell Line	embryonic stem cell
13	chr2:190984000-190985000	Enhancers	Placenta	Placenta
14	chr2:190984000-190985000	Active TSS	Ovary	ovary
15	chr2:190984200-190984600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr2:190984200-190984600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:190984200-190984600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:190984200-190984600	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr2:190984200-190984600	Enhancers	NH-A	brain
20	chr2:190984200-190984800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr2:190984200-190984800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:190984200-190984800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr2:190984200-190984800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr2:190984200-190984800	Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr2:190984200-190984800	Enhancers	Brain Angular Gyrus	brain
26	chr2:190984200-190984800	Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr2:190984200-190984800	Enhancers	NHDF-Ad	bronchial
28	chr2:190984200-190985000	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr2:190984200-190985000	Enhancers	Fetal Brain Male	brain
30	chr2:190984200-190985000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr2:190984200-190985000	Active TSS	Osteobl	bone
32	chr2:190984200-190985200	Enhancers	Primary T cells fromperipheralblood	blood
33	chr2:190984200-190985200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr2:190984200-190985200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:190984200-190985200	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr2:190984200-190985200	Active TSS	Duodenum Mucosa	Duodenum
37	chr2:190984200-190985200	Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr2:190984200-190985200	Enhancers	NHLF	lung
39	chr2:190984400-190984600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
40	chr2:190984400-190984600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr2:190984400-190984600	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr2:190984400-190984600	Flanking Active TSS	Brain Hippocampus Middle	brain
43	chr2:190984400-190984800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr2:190984400-190984800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr2:190984400-190984800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr2:190984400-190984800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr2:190984400-190984800	Enhancers	Fetal Lung	lung
48	chr2:190984400-190984800	Bivalent Enhancer	HepG2	liver
49	chr2:190984400-190985000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr2:190984400-190985000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links