Variant report

Variant	rs785225
Chromosome Location	chr2:191001065-191001066
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:35)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:35 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr2:191000885-191001812	HepG2	liver:	n/a	n/a
2	FOXA2	chr2:191000996-191001441	HepG2	liver:	n/a	n/a
3	ARID3A	chr2:191000928-191001388	HepG2	liver:	n/a	n/a
4	MYBL2	chr2:191000946-191001466	HepG2	liver:	n/a	n/a
5	ZNF143	chr2:191000913-191001191	H1-hESC	embryonic stem cell:	n/a	n/a
6	FOXA2	chr2:191000991-191001615	A549	lung:	n/a	n/a
7	HNF4G	chr2:191000959-191001467	HepG2	liver:	n/a	n/a
8	FOXA2	chr2:191001002-191001434	A549	lung:	n/a	n/a
9	TCF12	chr2:191000968-191001415	HepG2	liver:	n/a	n/a
10	TCF12	chr2:191000815-191001616	A549	lung:	n/a	n/a
11	HNF4A	chr2:191000984-191001456	HepG2	liver:	n/a	n/a
12	EP300	chr2:191000984-191001475	HepG2	liver:	n/a	n/a
13	TCF7L2	chr2:191001052-191001425	PANC-1	pancreas:	n/a	chr2:191001223-191001237
14	EP300	chr2:191000990-191001501	HepG2	liver:	n/a	n/a
15	BHLHE40	chr2:191000984-191001381	HepG2	liver:	n/a	n/a
16	CEBPZ	chr2:191000892-191001177	HepG2	liver:	n/a	n/a
17	FOXA1	chr2:191000968-191001565	HepG2	liver:	n/a	n/a
18	FOXA1	chr2:191000925-191001561	HepG2	liver:	n/a	n/a
19	HNF4G	chr2:191000836-191001571	HepG2	liver:	n/a	n/a
20	BHLHE40	chr2:191000972-191001298	HepG2	liver:	n/a	n/a
21	SP1	chr2:191001008-191001561	A549	lung:	n/a	n/a
22	FOXA1	chr2:191000892-191001457	HepG2	liver:	n/a	n/a
23	HDAC2	chr2:191000964-191001465	HepG2	liver:	n/a	n/a
24	SP1	chr2:191000944-191001572	A549	lung:	n/a	n/a
25	SRF	chr2:191001023-191001329	HepG2	liver:	n/a	chr2:191001193-191001211
26	MAZ	chr2:191000944-191001162	HepG2	liver:	n/a	n/a
27	KAP1	chr2:191000791-191001329	HEK293	kidney:	n/a	n/a
28	FOXA1	chr2:191000976-191001448	HepG2	liver:	n/a	n/a
29	SP1	chr2:191000902-191001409	HepG2	liver:	n/a	n/a
30	SETDB1	chr2:191000494-191001401	U2OS	brain:	n/a	n/a
31	HDAC2	chr2:191000964-191001471	HepG2	liver:	n/a	n/a
32	NFIC	chr2:191000965-191001482	HepG2	liver:	n/a	n/a
33	SRF	chr2:191001017-191001357	HepG2	liver:	n/a	chr2:191001193-191001211
34	TEAD4	chr2:191000835-191001553	HepG2	liver:	n/a	n/a
35	USF1	chr2:191000963-191001389	HepG2	liver:	n/a	n/a

No data

Variant related genes	Relation type
C2orf88	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11901445	0.81[EUR][1000 genomes]
rs72911308	0.83[ASN][1000 genomes]
rs72911310	0.83[ASN][1000 genomes]
rs785222	0.89[ASN][1000 genomes]
rs785223	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190991800-191004800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:190993200-191004800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:190996600-191008200	Weak transcription	Aorta	Aorta
4	chr2:190997000-191006200	Weak transcription	Psoas Muscle	Psoas
5	chr2:190999200-191004000	Weak transcription	Ovary	ovary
6	chr2:191000600-191001800	Enhancers	HepG2	liver
7	chr2:191000800-191001600	Enhancers	A549	lung

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