Variant report

Variant	rs72911644
Chromosome Location	chr4:121931914-121931915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11725572	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12640469	0.82[AFR][1000 genomes]
rs12641791	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643559	0.85[AFR][1000 genomes]
rs12644855	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12646861	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12647946	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28871055	0.89[AFR][1000 genomes]
rs2892918	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35253279	0.82[AFR][1000 genomes]
rs4282205	0.87[AFR][1000 genomes]
rs4315815	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364285	0.89[AFR][1000 genomes]
rs4479732	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56691078	0.87[AFR][1000 genomes]
rs56997621	0.87[AFR][1000 genomes]
rs57429779	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58275100	0.89[AFR][1000 genomes]
rs58383744	0.89[AFR][1000 genomes]
rs59058031	0.87[AFR][1000 genomes]
rs59370413	0.89[AFR][1000 genomes]
rs59750154	0.89[AFR][1000 genomes]
rs60241032	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61592820	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855125	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72909750	0.82[AFR][1000 genomes]
rs72909753	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909791	0.89[AFR][1000 genomes]
rs72909794	0.89[AFR][1000 genomes]
rs72909796	0.85[AFR][1000 genomes]
rs72909798	0.89[AFR][1000 genomes]
rs72909799	0.89[AFR][1000 genomes]
rs72909801	0.89[AFR][1000 genomes]
rs72911603	0.86[AFR][1000 genomes]
rs72911604	0.89[AFR][1000 genomes]
rs72911617	0.89[AFR][1000 genomes]
rs72911625	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911640	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698970	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7699505	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9715880	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121925600-121933800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:121928600-121936400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr4:121929000-121932600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr4:121929000-121933800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr4:121929600-121932000	Enhancers	Fetal Intestine Large	intestine
6	chr4:121929600-121932600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr4:121930000-121933600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:121930200-121934200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:121930200-121934400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:121930400-121934200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:121930600-121932600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr4:121930600-121933600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:121930800-121932600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr4:121931000-121932000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr4:121931200-121932000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:121931200-121932600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr4:121931200-121933800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:121931400-121933200	Weak transcription	Fetal Intestine Small	intestine
19	chr4:121931400-121933400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:121931400-121933600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr4:121931600-121935200	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:121931800-121932000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr4:121931800-121932400	Enhancers	Primary T cells fromperipheralblood	blood
24	chr4:121931800-121933400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr4:121931800-121933600	Enhancers	Primary T cells from cord blood	blood

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