Variant report

Variant	rs7698970
Chromosome Location	chr4:121893336-121893337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11725572	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12641791	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12644855	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12646861	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12647946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1551079	0.82[TSI][hapmap]
rs17051279	0.82[TSI][hapmap]
rs2390060	0.82[TSI][hapmap]
rs2892918	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4274874	0.82[TSI][hapmap]
rs4315815	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4479732	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57429779	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60241032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61592820	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6855125	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72909753	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72911625	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72911639	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72911640	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72911643	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72911644	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7699505	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121892000-121894200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:121892400-121894000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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