Variant report

Variant	rs72912369
Chromosome Location	chr18:45383426-45383427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12607804	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4357332	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72912362	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057722	chr18:45343965-45401360	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1058673	chr18:45360012-45404492	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1059186	chr18:45360012-45407405	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1062894	chr18:45368587-45387738	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1066394	chr18:45368587-45394386	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1060581	chr18:45368587-45397623	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1057525	chr18:45368587-45407405	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv1064282	chr18:45369857-45404768	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv1064797	chr18:45372027-45394386	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1063859	chr18:45372027-45404492	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1062318	chr18:45374239-45394780	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1055814	chr18:45374239-45395377	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1057298	chr18:45374239-45404428	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1062731	chr18:45374239-45404768	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1058128	chr18:45374658-45394780	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv1065607	chr18:45374658-45404751	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45342200-45384200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:45345400-45400200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr18:45356200-45384000	Weak transcription	Spleen	Spleen
4	chr18:45366200-45390000	Weak transcription	Colonic Mucosa	Colon
5	chr18:45366400-45384000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr18:45366400-45384000	Weak transcription	Brain Angular Gyrus	brain
7	chr18:45366400-45384000	Weak transcription	Esophagus	oesophagus
8	chr18:45366600-45408200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr18:45368200-45384000	Weak transcription	Stomach Mucosa	stomach
10	chr18:45369800-45383600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr18:45369800-45384000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr18:45369800-45384000	Weak transcription	Fetal Stomach	stomach
13	chr18:45369800-45386400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr18:45372000-45384000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr18:45372200-45386200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr18:45372200-45396000	Weak transcription	NHLF	lung
17	chr18:45373200-45384000	Weak transcription	Gastric	stomach
18	chr18:45373200-45384000	Weak transcription	Pancreas	Pancrea
19	chr18:45375200-45384200	Weak transcription	K562	blood
20	chr18:45375400-45384000	Weak transcription	NH-A	brain
21	chr18:45375600-45384000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr18:45375600-45384000	Weak transcription	Osteobl	bone
23	chr18:45375800-45383600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr18:45375800-45384000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr18:45375800-45384000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr18:45375800-45384000	Weak transcription	HepG2	liver
27	chr18:45380000-45384000	Strong transcription	A549	lung
28	chr18:45380600-45384000	Weak transcription	NHEK	skin
29	chr18:45380600-45386800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr18:45380800-45383600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr18:45380800-45384000	Weak transcription	HMEC	breast
32	chr18:45381200-45386800	ZNF genes & repeats	Fetal Lung	lung
33	chr18:45381200-45387000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr18:45381400-45384000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr18:45381400-45385800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
36	chr18:45381400-45385800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
37	chr18:45381600-45384600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
38	chr18:45381600-45386000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
39	chr18:45381600-45386600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
40	chr18:45381800-45384200	Strong transcription	HSMMtube	muscle
41	chr18:45381800-45384400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
42	chr18:45381800-45385400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
43	chr18:45381800-45385600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr18:45381800-45385800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr18:45381800-45385800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr18:45381800-45386600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr18:45381800-45387800	ZNF genes & repeats	Dnd41	blood
48	chr18:45382000-45383800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr18:45382000-45384000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr18:45382000-45384400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland

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