Variant report

Variant	rs72912421
Chromosome Location	chr6:87607169-87607170
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:87607161-87607211	HCF	heart:	n/a
2	chr6:87607161-87607211	SAEC	small airway:	n/a
3	chr6:87607161-87607211	GM06990	blood:	n/a
4	chr6:87607161-87607211	U87	brain:	n/a
5	chr6:87607161-87607211	HEEpiC	esophagus:	n/a
6	chr6:87607161-87607211	HNPCEpiC	eye:	n/a
7	chr6:87607161-87607211	HCT-116	colon:	n/a
8	chr6:87607161-87607211	HL-60	blood:	n/a
9	chr6:87607161-87607211	AG04450	lung:	fetal
10	chr6:87607161-87607211	MCF-7	breast:	n/a
11	chr6:87607161-87607211	AG09319	gingival:	n/a
12	chr6:87607161-87607211	NB4	blood:	n/a
13	chr6:87607161-87607211	RPTEC	kidney:	n/a
14	chr6:87607161-87607211	NHDF-neo	bronchial:	n/a
15	chr6:87607161-87607211	AoSMC	blood vessel:	n/a
16	chr6:87607161-87607211	Hepatocyte	liver:	n/a
17	chr6:87607161-87607211	HCPEpiC	choroid plexus:	n/a
18	chr6:87607161-87607211	A549	lung:	n/a
19	chr6:87607161-87607211	ovcar-3	ovarian:	n/a
20	chr6:87607161-87607211	MCF10A-Er-Src	breast:	n/a
21	chr6:87607161-87607211	NH-A	brain:	n/a
22	chr6:87607161-87607211	HepG2	liver:	n/a
23	chr6:87607161-87607211	ProgFib	skin:	n/a
24	chr6:87607161-87607211	AG10803	skin:	n/a
25	chr6:87607161-87607211	PFSK-1	brain:	n/a
26	chr6:87607161-87607211	SK-N-SH	brain:	n/a
27	chr6:87607161-87607211	NHBE	bronchial:	n/a
28	chr6:87607161-87607211	HCM	heart:	n/a
29	chr6:87607161-87607211	ECC-1	luminal epithelium:	n/a
30	chr6:87607161-87607211	AG09309	skin:	n/a
31	chr6:87607161-87607211	GM12878	blood:	n/a
32	chr6:87607161-87607211	HUVEC	blood vessel:	n/a
33	chr6:87607161-87607211	NT2-D1	testis:	n/a
34	chr6:87607161-87607211	IMR90	lung:	fetal
35	chr6:87607161-87607211	Hela-S3	cervix:	n/a
36	chr6:87607161-87607211	GM12891	blood:	n/a
37	chr6:87607161-87607211	H1-hESC	embryonic stem cell:	embryo
38	chr6:87607161-87607211	LNCaP	prostate:	n/a
39	chr6:87607161-87607211	BE2_C	brain:	n/a
40	chr6:87607161-87607211	GM12892	blood:	n/a
41	chr6:87607161-87607211	HPAEpiC	pulmonary alveolar:	n/a
42	chr6:87607161-87607211	PrEC	prostate:	n/a
43	chr6:87607161-87607211	SK-N-MC	brain:	n/a
44	chr6:87607161-87607211	SK-N-SH_RA	brain:	n/a
45	chr6:87607161-87607211	AG04449	skin:	fetal
46	chr6:87607161-87607211	T-47D	breast:	n/a
47	chr6:87607161-87607211	HAEpiC	amniotic membrane:	n/a
48	chr6:87607161-87607211	SKMC	muscle:	n/a
49	chr6:87607161-87607211	HRE	kidney:	n/a
50	chr6:87607161-87607211	Caco-2	colon:	n/a

No data

Variant related genes	Relation type
ENSG00000220240	CpG island

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11964560	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12525091	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12525105	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529712	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16877989	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1950791	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2145049	0.81[EUR][1000 genomes]
rs2875501	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3763229	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3763230	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55973818	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72910575	0.81[EUR][1000 genomes]
rs72910588	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72910598	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72910602	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026234	chr6:86745200-87640200	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv532046	chr6:86754494-87615799	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1024339	chr6:86778852-87622650	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018878	chr6:86778852-87691755	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1031639	chr6:86815397-87721507	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1025307	chr6:87354495-87640200	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	esv1811101	chr6:87456503-87645214	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2758066	chr6:87456503-87645214	Enhancers Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv2759452	chr6:87456503-87645214	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv970341	chr6:87567573-87616057	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv981163	chr6:87606791-87613920	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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