Variant report

Variant	rs72914489
Chromosome Location	chr18:44946683-44946684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs72914463	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72914465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916509	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72916510	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72916512	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72916514	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72916516	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72916542	0.90[EUR][1000 genomes]
rs72916544	0.90[EUR][1000 genomes]
rs72916547	0.90[EUR][1000 genomes]
rs72916550	0.90[EUR][1000 genomes]
rs72916591	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	esv1801141	chr18:44908270-44955409	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44938000-44951400	Weak transcription	Pancreas	Pancrea
2	chr18:44945000-44947000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:44946200-44946800	Enhancers	Primary B cells from peripheral blood	blood
4	chr18:44946400-44947200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr18:44946600-44946800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
6	chr18:44946600-44946800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr18:44946600-44946800	Bivalent Enhancer	GM12878-XiMat	blood
8	chr18:44946600-44947200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr18:44946600-44948600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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