Variant report
| Variant | rs72916547 |
|---|---|
| Chromosome Location | chr18:44954645-44954646 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:44944185..44945967-chr18:44952003..44954694,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs72914465 | 0.90[EUR][1000 genomes] |
| rs72914469 | 0.90[EUR][1000 genomes] |
| rs72914473 | 0.90[EUR][1000 genomes] |
| rs72914474 | 0.90[EUR][1000 genomes] |
| rs72914476 | 0.90[EUR][1000 genomes] |
| rs72914478 | 0.90[EUR][1000 genomes] |
| rs72914480 | 0.90[EUR][1000 genomes] |
| rs72914483 | 0.90[EUR][1000 genomes] |
| rs72914488 | 0.90[EUR][1000 genomes] |
| rs72914489 | 0.90[EUR][1000 genomes] |
| rs72914491 | 0.90[EUR][1000 genomes] |
| rs72914494 | 0.90[EUR][1000 genomes] |
| rs72914495 | 0.90[EUR][1000 genomes] |
| rs72914499 | 0.90[EUR][1000 genomes] |
| rs72916507 | 0.90[EUR][1000 genomes] |
| rs72916509 | 0.97[EUR][1000 genomes] |
| rs72916510 | 0.97[EUR][1000 genomes] |
| rs72916512 | 0.97[EUR][1000 genomes] |
| rs72916514 | 0.97[EUR][1000 genomes] |
| rs72916516 | 0.97[EUR][1000 genomes] |
| rs72916542 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72916544 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72916550 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72916591 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72918528 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72918553 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833641 | chr18:44815063-45020202 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv1801141 | chr18:44908270-44955409 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:44953800-44955200 | Enhancers | Fetal Stomach | stomach |
| 2 | chr18:44954000-44955200 | Enhancers | Brain Germinal Matrix | brain |
