Variant report

Variant	rs72915991
Chromosome Location	chr2:55664071-55664072
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17046835	0.87[AFR][1000 genomes]
rs17046888	0.81[AFR][1000 genomes]
rs17046898	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60920006	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6714932	0.84[AFR][1000 genomes]
rs6734415	1.00[AMR][1000 genomes]
rs6735009	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72915982	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72915986	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72915988	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72915989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72923130	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923150	0.82[AFR][1000 genomes]
rs72923183	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72923194	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929306	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7562535	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7589558	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7600665	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006170	chr2:55530179-55809251	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv520581	chr2:55622825-55903016	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv961778	chr2:55659501-55668562	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55664000-55664200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links