Variant report

Variant	rs72916086
Chromosome Location	chr3:87024535-87024536
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10514743	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17028628	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898266	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898267	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1946747	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55854261	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56077607	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56338126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56346369	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56781488	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57070008	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57383190	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57543641	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57604593	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59090592	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59701679	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61594756	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6551256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762893	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763484	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784668	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788077	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802660	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916057	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72916059	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72916062	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72916064	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72916069	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72916081	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916083	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916091	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916092	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916098	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916100	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72916102	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72918103	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72918106	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72918107	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72918108	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72918113	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72918116	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72918121	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72918124	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72918169	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73844420	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73844421	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73844432	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73844434	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73844442	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73844457	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7617401	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7627441	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7645797	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86998800-87036000	Weak transcription	Psoas Muscle	Psoas
2	chr3:87007200-87026600	Weak transcription	Esophagus	oesophagus
3	chr3:87007200-87038400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:87008000-87028800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:87008000-87032000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:87008000-87034200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:87011600-87026600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:87012600-87032600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:87015000-87028400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:87015400-87027200	Weak transcription	Hela-S3	cervix
11	chr3:87016200-87039000	Weak transcription	Fetal Stomach	stomach
12	chr3:87016800-87036800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:87017000-87029400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:87017600-87039000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:87018200-87026800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:87018200-87032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:87018200-87033600	Weak transcription	A549	lung
18	chr3:87018400-87036400	Weak transcription	Fetal Intestine Large	intestine
19	chr3:87018600-87026400	Weak transcription	Adipose Nuclei	Adipose
20	chr3:87018600-87026400	Weak transcription	Aorta	Aorta
21	chr3:87018600-87026600	Weak transcription	Pancreas	Pancrea
22	chr3:87018600-87034200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:87019000-87025600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:87019200-87025200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr3:87019400-87026200	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:87019400-87036600	Weak transcription	Fetal Brain Male	brain
27	chr3:87019800-87026400	Weak transcription	Ovary	ovary
28	chr3:87020000-87026400	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:87020400-87027200	Genic enhancers	NHDF-Ad	bronchial
30	chr3:87021800-87024600	Genic enhancers	Osteobl	bone
31	chr3:87021800-87024800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:87022800-87028000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:87023000-87024800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:87023000-87026400	Strong transcription	HSMMtube	muscle
35	chr3:87023200-87026400	Weak transcription	HMEC	breast
36	chr3:87023400-87025200	Weak transcription	Fetal Lung	lung
37	chr3:87023600-87026800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr3:87023800-87024800	Strong transcription	Placenta	Placenta
39	chr3:87023800-87026400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr3:87023800-87027000	Strong transcription	NH-A	brain
41	chr3:87024000-87025000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:87024000-87026400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:87024200-87025200	Weak transcription	NHLF	lung
44	chr3:87024200-87025400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:87024200-87025800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr3:87024400-87024800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:87024400-87025200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:87024400-87025400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr3:87024400-87026400	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr3:87024400-87026400	Strong transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links