Variant report
| Variant | rs72918461 |
|---|---|
| Chromosome Location | chr3:97772231-97772232 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-OR5AC2-2 | chr3:97772218-97772583 | NONHSAT090782 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs4476548 | 1.00[AMR][1000 genomes] |
| rs58748505 | 1.00[AMR][1000 genomes] |
| rs6786885 | 1.00[AMR][1000 genomes] |
| rs72918463 | 1.00[AMR][1000 genomes] |
| rs72918464 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72933943 | 1.00[AMR][1000 genomes] |
| rs72933953 | 1.00[AMR][1000 genomes] |
| rs72933955 | 1.00[AMR][1000 genomes] |
| rs72933960 | 1.00[AMR][1000 genomes] |
| rs72933962 | 1.00[AMR][1000 genomes] |
| rs72933966 | 1.00[AMR][1000 genomes] |
| rs72933968 | 1.00[AMR][1000 genomes] |
| rs72933969 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877207 | chr3:97708955-97899294 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv877208 | chr3:97740924-97775369 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv869347 | chr3:97742604-98051633 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| 4 | nsv470772 | chr3:97746851-97778744 | Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
