Variant report

Variant	rs72918464
Chromosome Location	chr3:97777308-97777309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4476548	1.00[AMR][1000 genomes]
rs58748505	1.00[AMR][1000 genomes]
rs6786885	1.00[AMR][1000 genomes]
rs72918461	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72918463	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72933943	1.00[AMR][1000 genomes]
rs72933953	1.00[AMR][1000 genomes]
rs72933955	1.00[AMR][1000 genomes]
rs72933960	1.00[AMR][1000 genomes]
rs72933962	1.00[AMR][1000 genomes]
rs72933966	1.00[AMR][1000 genomes]
rs72933968	1.00[AMR][1000 genomes]
rs72933969	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877207	chr3:97708955-97899294	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv470772	chr3:97746851-97778744	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97776600-97777600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:97777000-97778400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:97777200-97777600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:97777200-97777800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:97777200-97777800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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