Variant report

Variant	rs72918881
Chromosome Location	chr4:102337219-102337220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10006779	1.00[ASN][1000 genomes]
rs10009118	1.00[ASN][1000 genomes]
rs10014486	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10029239	1.00[ASN][1000 genomes]
rs11939694	1.00[ASN][1000 genomes]
rs1837771	0.95[ASN][1000 genomes]
rs2119597	0.85[ASN][1000 genomes]
rs2165503	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28360831	0.95[ASN][1000 genomes]
rs28536504	0.95[ASN][1000 genomes]
rs28555671	0.97[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs28635484	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2866377	1.00[ASN][1000 genomes]
rs2866378	1.00[ASN][1000 genomes]
rs2866379	1.00[ASN][1000 genomes]
rs28694583	0.95[ASN][1000 genomes]
rs28700161	1.00[ASN][1000 genomes]
rs28704863	0.95[ASN][1000 genomes]
rs28720081	1.00[ASN][1000 genomes]
rs28827307	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28888113	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2903268	1.00[ASN][1000 genomes]
rs4312762	0.90[ASN][1000 genomes]
rs4394003	1.00[ASN][1000 genomes]
rs55859752	0.95[ASN][1000 genomes]
rs57899609	0.89[ASN][1000 genomes]
rs58251277	1.00[ASN][1000 genomes]
rs58296360	0.95[ASN][1000 genomes]
rs58947457	0.89[ASN][1000 genomes]
rs6832965	1.00[ASN][1000 genomes]
rs6856511	1.00[ASN][1000 genomes]
rs72923706	0.81[ASN][1000 genomes]
rs72930867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73833769	0.89[ASN][1000 genomes]
rs73833770	0.89[ASN][1000 genomes]
rs7678599	0.84[ASN][1000 genomes]
rs7697450	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9884169	1.00[ASN][1000 genomes]
rs9884170	1.00[ASN][1000 genomes]
rs9884171	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884173	1.00[ASN][1000 genomes]
rs9884606	1.00[ASN][1000 genomes]
rs9995557	1.00[ASN][1000 genomes]
rs9996429	1.00[ASN][1000 genomes]
rs9999708	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1009302	chr4:102335072-102410893	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102335800-102337800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:102336200-102337800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:102336400-102337600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr4:102336400-102339600	Weak transcription	HUVEC	blood vessel
5	chr4:102336400-102340200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:102336400-102341600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:102336800-102340400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:102336800-102341400	Weak transcription	Adipose Nuclei	Adipose
9	chr4:102337000-102337600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr4:102337200-102337800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:102337200-102337800	Enhancers	Right Ventricle	heart
12	chr4:102337200-102338400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
13	chr4:102337200-102338800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr4:102337200-102339200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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