Variant report

Variant	rs7678599
Chromosome Location	chr4:102419647-102419648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10006779	0.84[ASN][1000 genomes]
rs10009118	0.84[ASN][1000 genomes]
rs10029239	0.84[ASN][1000 genomes]
rs11930736	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11930803	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11934301	0.95[AMR][1000 genomes]
rs11935025	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11938546	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11939694	0.84[ASN][1000 genomes]
rs11939734	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17031336	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1863570	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1863571	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1863572	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28635484	0.84[ASN][1000 genomes]
rs2866377	0.84[ASN][1000 genomes]
rs2866378	0.84[ASN][1000 genomes]
rs2866379	0.84[ASN][1000 genomes]
rs28700161	0.84[ASN][1000 genomes]
rs28720081	0.84[ASN][1000 genomes]
rs2903268	0.84[ASN][1000 genomes]
rs4394003	0.84[ASN][1000 genomes]
rs55696413	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs55742367	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56061792	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56092935	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57325962	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57494603	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57518166	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57621522	0.95[AMR][1000 genomes]
rs57653723	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57899609	0.84[ASN][1000 genomes]
rs58251277	0.84[ASN][1000 genomes]
rs58460079	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58632125	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58857521	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58947457	0.84[ASN][1000 genomes]
rs59671449	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60072847	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6532940	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6532942	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6812969	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6819438	0.88[ASN][1000 genomes]
rs6825007	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6825417	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6827691	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6832842	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6832965	0.84[ASN][1000 genomes]
rs6839924	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6840572	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6841673	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6843042	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6844889	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6846071	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6847894	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6850147	0.81[ASN][1000 genomes]
rs6850770	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6850796	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6851740	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6852199	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6856511	0.84[ASN][1000 genomes]
rs6856516	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6858364	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72918881	0.84[ASN][1000 genomes]
rs73833769	0.84[ASN][1000 genomes]
rs73833770	0.84[ASN][1000 genomes]
rs73833792	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73833793	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73836405	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73836419	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73836420	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73836422	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73836425	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73836426	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73836430	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9884169	0.84[ASN][1000 genomes]
rs9884170	0.84[ASN][1000 genomes]
rs9884171	0.84[ASN][1000 genomes]
rs9884173	0.84[ASN][1000 genomes]
rs9884606	0.84[ASN][1000 genomes]
rs9995557	0.84[ASN][1000 genomes]
rs9996429	0.84[ASN][1000 genomes]
rs9999708	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879677	chr4:102357934-102520785	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv997690	chr4:102397296-102758125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv537201	chr4:102397296-102758125	Genic enhancers Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv964304	chr4:102411214-102432546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102397800-102422000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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