Variant report

Variant	rs72918925
Chromosome Location	chr2:55466963-55466964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55464660..55467438-chr2:55495235..55498187,2	K562	blood:
2	chr2:55466265..55468556-chr2:55485634..55487612,2	MCF-7	breast:
3	chr2:55466615..55468826-chr2:55656150..55659154,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085760	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1133183	0.92[AFR][1000 genomes]
rs17046786	1.00[AFR][1000 genomes]
rs35662893	1.00[AFR][1000 genomes]
rs59727596	1.00[AFR][1000 genomes]
rs60218056	1.00[AFR][1000 genomes]
rs6744208	0.91[AFR][1000 genomes]
rs72914588	0.91[AFR][1000 genomes]
rs72914589	0.84[AFR][1000 genomes]
rs72914598	0.84[AFR][1000 genomes]
rs72916724	0.92[AFR][1000 genomes]
rs72916760	0.92[AFR][1000 genomes]
rs72916779	0.85[AFR][1000 genomes]
rs72916789	0.85[AFR][1000 genomes]
rs72918903	1.00[AFR][1000 genomes]
rs72918908	1.00[AFR][1000 genomes]
rs72918936	1.00[AFR][1000 genomes]
rs72918947	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522016	chr2:55404794-55560298	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3348896	chr2:55429540-55498552	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55461000-55470200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr2:55461400-55477600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:55461600-55467400	Strong transcription	Adipose Nuclei	Adipose
4	chr2:55461600-55467800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr2:55461600-55469400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:55461600-55471600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:55461600-55477000	Strong transcription	Fetal Muscle Leg	muscle
8	chr2:55461600-55481600	Strong transcription	Fetal Thymus	thymus
9	chr2:55461600-55495400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:55461600-55495400	Weak transcription	Stomach Mucosa	stomach
11	chr2:55461800-55467400	Strong transcription	Liver	Liver
12	chr2:55461800-55467400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr2:55461800-55472400	Weak transcription	Gastric	stomach
14	chr2:55461800-55472400	Weak transcription	Right Ventricle	heart
15	chr2:55461800-55474400	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr2:55461800-55493400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr2:55461800-55495000	Weak transcription	Fetal Brain Male	brain
18	chr2:55462000-55467200	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr2:55462000-55467400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr2:55462000-55467600	Weak transcription	Fetal Intestine Small	intestine
21	chr2:55462000-55472600	Weak transcription	Fetal Heart	heart
22	chr2:55462000-55493200	Strong transcription	Duodenum Mucosa	Duodenum
23	chr2:55462200-55467600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr2:55462200-55473200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr2:55462200-55490200	Weak transcription	Small Intestine	intestine
26	chr2:55462400-55467000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr2:55462400-55467200	Strong transcription	HMEC	breast
28	chr2:55462400-55467400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:55462400-55476800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr2:55462400-55476800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr2:55462600-55467200	Strong transcription	NHDF-Ad	bronchial
32	chr2:55462600-55485800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:55462800-55467800	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr2:55463000-55467000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr2:55463000-55467400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr2:55463000-55467800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr2:55463000-55477600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:55463000-55480200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr2:55463000-55481000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr2:55463000-55495400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr2:55463200-55470400	Weak transcription	Colon Smooth Muscle	Colon
42	chr2:55463200-55481000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr2:55463400-55467600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr2:55463400-55470400	Strong transcription	Osteobl	bone
45	chr2:55463400-55472400	Weak transcription	Lung	lung
46	chr2:55463400-55472400	Weak transcription	Ovary	ovary
47	chr2:55463400-55474200	Weak transcription	Aorta	Aorta
48	chr2:55463400-55475800	Weak transcription	Spleen	Spleen
49	chr2:55463400-55488200	Weak transcription	Pancreas	Pancrea
50	chr2:55463600-55469000	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links