The 2.0 version of rSNPBase

Variant report

Variant rs72920570
Chromosome Location chr2:54849823-54849824
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54829800-54859800 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr2:54838800-54860200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr2:54838800-54893400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
4 chr2:54839000-54864200 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr2:54839200-54861800 Strong transcription HUES48 Cell Line embryonic stem cell
6 chr2:54839200-54866000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr2:54839400-54853000 Strong transcription Fetal Intestine Large intestine
8 chr2:54839400-54895000 Strong transcription Primary neutrophils fromperipheralblood blood
9 chr2:54839600-54852400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr2:54839600-54862600 Strong transcription Primary monocytes fromperipheralblood blood
11 chr2:54840800-54861400 Strong transcription Cortex derived primary cultured neurospheres brain
12 chr2:54841000-54861400 Strong transcription iPS-20b Cell Line embryonic stem cell
13 chr2:54841000-54861400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr2:54841200-54861200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr2:54841200-54897800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr2:54841600-54852400 Strong transcription HSMMtube muscle
17 chr2:54841600-54856200 Strong transcription Hela-S3 cervix
18 chr2:54841600-54857000 Strong transcription HSMM muscle
19 chr2:54841800-54857000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr2:54841800-54860000 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr2:54841800-54860000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr2:54842000-54863600 Strong transcription Fetal Brain Female brain
23 chr2:54842400-54856800 Strong transcription NH-A brain
24 chr2:54842400-54861400 Strong transcription HUES6 Cell Line embryonic stem cell
25 chr2:54842400-54862800 Strong transcription NHEK skin
26 chr2:54842600-54861000 Strong transcription iPS-18 Cell Line embryonic stem cell
27 chr2:54842600-54892000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr2:54842800-54862400 Strong transcription H1 Cell Line embryonic stem cell
29 chr2:54842800-54867800 Strong transcription H9 Cell Line embryonic stem cell
30 chr2:54843000-54861400 Strong transcription HUES64 Cell Line embryonic stem cell
31 chr2:54844200-54850000 Strong transcription K562 blood
32 chr2:54844400-54860000 Strong transcription Placenta Amnion Placenta Amnion
33 chr2:54845400-54850000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr2:54846000-54850600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr2:54846000-54856600 Strong transcription Duodenum Mucosa Duodenum
36 chr2:54846000-54860800 Strong transcription Primary hematopoietic stem cells blood
37 chr2:54846200-54850400 Strong transcription NHLF lung
38 chr2:54846200-54856600 Strong transcription GM12878-XiMat blood
39 chr2:54846200-54857000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr2:54846200-54861400 Strong transcription Primary T regulatory cells fromperipheralblood blood
41 chr2:54846200-54864400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
42 chr2:54846400-54851800 Strong transcription Muscle Satellite Cultured Cells --
43 chr2:54846400-54856800 Strong transcription Rectal Mucosa Donor 29 rectum
44 chr2:54846400-54856800 Strong transcription Sigmoid Colon Sigmoid Colon
45 chr2:54846400-54859600 Strong transcription Osteobl bone
46 chr2:54846400-54860800 Strong transcription Primary B cells from peripheral blood blood
47 chr2:54846400-54895600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr2:54846400-54896600 Strong transcription Primary hematopoietic stem cells short term culture blood
49 chr2:54846600-54856600 Strong transcription Fetal Intestine Small intestine
50 chr2:54846600-54859800 Strong transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015