The 2.0 version of rSNPBase

Variant report

Variant rs72920549
Chromosome Location chr2:54835448-54835449
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54824800-54839200 Weak transcription Cortex derived primary cultured neurospheres brain
2 chr2:54827200-54839000 Weak transcription Hela-S3 cervix
3 chr2:54827600-54839200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr2:54827600-54839200 Weak transcription Dnd41 blood
5 chr2:54827800-54835600 Enhancers Primary T helper naive cells from peripheral blood blood
6 chr2:54829800-54859800 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr2:54830200-54835800 Enhancers Primary T regulatory cells fromperipheralblood blood
8 chr2:54830800-54839200 Weak transcription Esophagus oesophagus
9 chr2:54831000-54837800 Weak transcription Osteobl bone
10 chr2:54831200-54838000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr2:54831400-54837000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr2:54832200-54836200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr2:54832200-54838200 Enhancers Brain Hippocampus Middle brain
14 chr2:54832200-54839200 Weak transcription Fetal Muscle Trunk muscle
15 chr2:54832200-54839200 Weak transcription Rectal Smooth Muscle rectum
16 chr2:54832200-54839200 Weak transcription Stomach Smooth Muscle stomach
17 chr2:54832200-54840800 Weak transcription K562 blood
18 chr2:54832400-54837200 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr2:54832400-54839200 Weak transcription Placenta Placenta
20 chr2:54832400-54843400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr2:54832400-54843800 Weak transcription Brain Germinal Matrix brain
22 chr2:54832600-54835800 Enhancers Primary T helper cells fromperipheralblood blood
23 chr2:54832600-54837200 Weak transcription HSMMtube muscle
24 chr2:54832600-54839200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
25 chr2:54832800-54839000 Weak transcription Monocytes-CD14+_RO01746 blood
26 chr2:54832800-54839600 Weak transcription Primary monocytes fromperipheralblood blood
27 chr2:54833000-54836000 Genic enhancers Fetal Adrenal Gland Adrenal Gland
28 chr2:54833000-54836600 Weak transcription HUES6 Cell Line embryonic stem cell
29 chr2:54833000-54837800 Weak transcription HUES64 Cell Line embryonic stem cell
30 chr2:54833000-54839400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr2:54833000-54839400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr2:54833000-54839400 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr2:54833000-54839600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr2:54833000-54841000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr2:54833200-54836600 Weak transcription Duodenum Mucosa Duodenum
36 chr2:54833200-54836600 Weak transcription Small Intestine intestine
37 chr2:54833400-54838800 Weak transcription Primary B cells from cord blood blood
38 chr2:54833400-54843400 Weak transcription Fetal Brain Male brain
39 chr2:54833600-54836200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr2:54833600-54836200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr2:54833600-54836200 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr2:54833600-54836600 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr2:54833600-54839200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr2:54833600-54839200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
45 chr2:54833600-54839200 Weak transcription Psoas Muscle Psoas
46 chr2:54833600-54839600 Weak transcription Colon Smooth Muscle Colon
47 chr2:54833600-54840000 Weak transcription Fetal Kidney kidney
48 chr2:54833800-54835800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr2:54833800-54836400 Weak transcription Aorta Aorta
50 chr2:54833800-54836600 Weak transcription Gastric stomach

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Last update: Aug 31, 2015