The 2.0 version of rSNPBase

Variant report

Variant rs57749522
Chromosome Location chr2:54900784-54900785
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54894600-54902200 Weak transcription Psoas Muscle Psoas
2 chr2:54895800-54902200 Weak transcription Ovary ovary
3 chr2:54896800-54902400 Weak transcription K562 blood
4 chr2:54897000-54903800 Weak transcription Brain Germinal Matrix brain
5 chr2:54897200-54907800 Weak transcription Primary T killer memory cells from peripheral blood blood
6 chr2:54897600-54902800 Weak transcription Gastric stomach
7 chr2:54897800-54901200 Strong transcription A549 lung
8 chr2:54898000-54901400 Weak transcription Dnd41 blood
9 chr2:54898200-54902600 Weak transcription Fetal Heart heart
10 chr2:54898200-54907000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr2:54898400-54900800 Weak transcription Thymus Thymus
12 chr2:54898400-54902800 Weak transcription Aorta Aorta
13 chr2:54898400-54904600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr2:54898600-54900800 Weak transcription Fetal Intestine Large intestine
15 chr2:54898600-54901200 Weak transcription Fetal Brain Male brain
16 chr2:54898600-54901400 Enhancers HepG2 liver
17 chr2:54898600-54901600 Weak transcription Brain Substantia Nigra brain
18 chr2:54898600-54903400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr2:54898600-54907800 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr2:54898800-54901000 Weak transcription Fetal Brain Female brain
21 chr2:54898800-54901200 Enhancers Liver Liver
22 chr2:54899200-54900800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
23 chr2:54899200-54901200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
24 chr2:54899200-54901400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr2:54899200-54903400 Enhancers Pancreas Pancrea
26 chr2:54899200-54903400 Enhancers Spleen Spleen
27 chr2:54899400-54901800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr2:54899400-54902000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
29 chr2:54899400-54902000 Enhancers Colon Smooth Muscle Colon
30 chr2:54899600-54900800 Enhancers Brain Cingulate Gyrus brain
31 chr2:54899600-54900800 Enhancers NHLF lung
32 chr2:54899600-54901200 Enhancers Breast Myoepithelial Primary Cells Breast
33 chr2:54899600-54901200 Enhancers Primary B cells from peripheral blood blood
34 chr2:54899600-54902600 Enhancers Fetal Adrenal Gland Adrenal Gland
35 chr2:54899600-54903000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr2:54899600-54903200 Weak transcription NH-A brain
37 chr2:54899800-54900800 Enhancers Brain Anterior Caudate brain
38 chr2:54899800-54900800 Enhancers Brain Hippocampus Middle brain
39 chr2:54899800-54901000 Enhancers ES-WA7 Cell Line embryonic stem cell
40 chr2:54899800-54901200 Enhancers Sigmoid Colon Sigmoid Colon
41 chr2:54899800-54901400 Enhancers Primary B cells from cord blood blood
42 chr2:54899800-54901400 Enhancers Right Atrium heart
43 chr2:54899800-54901600 Enhancers Primary Natural Killer cells fromperipheralblood blood
44 chr2:54899800-54902000 Enhancers Left Ventricle heart
45 chr2:54899800-54902800 Enhancers Fetal Lung lung
46 chr2:54899800-54903000 Weak transcription HSMM muscle
47 chr2:54900000-54900800 Enhancers iPS-15b Cell Line embryonic stem cell
48 chr2:54900000-54901000 Flanking Active TSS GM12878-XiMat blood
49 chr2:54900000-54901200 Enhancers Primary T helper cells PMA-I stimulated --
50 chr2:54900000-54901400 Flanking Active TSS Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015