Variant report

Variant	rs72911566
Chromosome Location	chr2:54908624-54908625
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54907957..54910043-chr2:54910399..54913105,2	MCF-7	breast:
2	chr2:54903042..54905906-chr2:54907957..54909608,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11888386	1.00[EUR][1000 genomes]
rs1549839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046281	1.00[EUR][1000 genomes]
rs57381328	1.00[EUR][1000 genomes]
rs57623434	1.00[EUR][1000 genomes]
rs57749522	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58833605	1.00[EUR][1000 genomes]
rs58920119	1.00[EUR][1000 genomes]
rs59039394	1.00[EUR][1000 genomes]
rs59755359	1.00[EUR][1000 genomes]
rs60282658	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60410507	1.00[EUR][1000 genomes]
rs60853661	1.00[EUR][1000 genomes]
rs6705313	1.00[EUR][1000 genomes]
rs6714663	1.00[EUR][1000 genomes]
rs6740557	1.00[EUR][1000 genomes]
rs6743161	1.00[EUR][1000 genomes]
rs6751570	1.00[EUR][1000 genomes]
rs72906405	1.00[EUR][1000 genomes]
rs72906407	1.00[EUR][1000 genomes]
rs72906419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906421	1.00[EUR][1000 genomes]
rs72906425	1.00[EUR][1000 genomes]
rs72906426	1.00[EUR][1000 genomes]
rs72911570	1.00[EUR][1000 genomes]
rs72911573	1.00[EUR][1000 genomes]
rs72913540	1.00[EUR][1000 genomes]
rs72913543	1.00[EUR][1000 genomes]
rs72913547	1.00[EUR][1000 genomes]
rs72913549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72913551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72915537	1.00[EUR][1000 genomes]
rs72915543	1.00[EUR][1000 genomes]
rs72915544	1.00[EUR][1000 genomes]
rs72915554	1.00[EUR][1000 genomes]
rs72915563	1.00[EUR][1000 genomes]
rs72915572	1.00[EUR][1000 genomes]
rs72915587	1.00[EUR][1000 genomes]
rs72915590	1.00[EUR][1000 genomes]
rs72917518	1.00[EUR][1000 genomes]
rs72917541	1.00[EUR][1000 genomes]
rs72917550	1.00[EUR][1000 genomes]
rs72917571	1.00[EUR][1000 genomes]
rs72918739	1.00[AMR][1000 genomes]
rs72918780	1.00[AMR][1000 genomes]
rs72918782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72918788	1.00[EUR][1000 genomes]
rs72919507	1.00[EUR][1000 genomes]
rs72920524	1.00[EUR][1000 genomes]
rs72920525	1.00[EUR][1000 genomes]
rs72920549	1.00[EUR][1000 genomes]
rs72920550	1.00[EUR][1000 genomes]
rs72920563	1.00[EUR][1000 genomes]
rs72920576	1.00[EUR][1000 genomes]
rs7572839	1.00[EUR][1000 genomes]
rs7580158	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv582024	chr2:54894649-54999712	Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54903400-54908800	Weak transcription	Spleen	Spleen
2	chr2:54903400-54915600	Weak transcription	Right Atrium	heart
3	chr2:54905800-54909400	Enhancers	Dnd41	blood
4	chr2:54907600-54908800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:54907600-54908800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:54907600-54908800	Enhancers	Lung	lung
7	chr2:54907800-54908800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
8	chr2:54908000-54908800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr2:54908000-54914800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:54908200-54909200	Enhancers	GM12878-XiMat	blood
11	chr2:54908200-54910800	Weak transcription	Fetal Intestine Large	intestine
12	chr2:54908200-54910800	Weak transcription	Pancreas	Pancrea
13	chr2:54908200-54910800	Weak transcription	HMEC	breast
14	chr2:54908200-54914800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:54908400-54910200	Weak transcription	HepG2	liver

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