Variant report

Variant	rs72920754
Chromosome Location	chr18:28547450-28547451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10502554	1.00[ASN][1000 genomes]
rs10502555	1.00[ASN][1000 genomes]
rs11873825	1.00[ASN][1000 genomes]
rs12326260	1.00[ASN][1000 genomes]
rs16961008	1.00[ASN][1000 genomes]
rs16961011	1.00[ASN][1000 genomes]
rs16961031	1.00[ASN][1000 genomes]
rs1790692	1.00[ASN][1000 genomes]
rs55669081	1.00[ASN][1000 genomes]
rs72920731	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8094175	1.00[ASN][1000 genomes]
rs8097404	1.00[ASN][1000 genomes]
rs8098117	1.00[ASN][1000 genomes]
rs9807744	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833613	chr18:28446454-28623599	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28547200-28547600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr18:28547400-28547800	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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